pycom07g16900

mRNA-decapping enzyme subunit 2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
19387396 .. 19388090
695 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGAACATTGATCGATCATGGATTTTATCACATCAGTCCCCAGTTGCTCCAAGACCTGATATGCCTCTCAAAGGAATCAGCGTGTGGAATGCGAAAAGCAGCTCGACAGGGAGTAGTAGCCCCATGATAGTGGAGAGCCAATCAACTAAACCTGAGCCCGAGGTTCGTCCTCCTGAGACAGGACCAGGCAAGAGTTTCAGAAACTTCAGGTTTGATGTTGCTCCAATCTTGCAAGCAATTGATGCTGGTTTCTGTTCTTCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.57

Weight (kDa)

7.94

Isoelectric Point (pI)

80.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 71, 179
AgsI TTSAA 1 cut(s) 261
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 170
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 179
Bse1I ACTGG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 71, 179
BseMII CTCAG 2 cut(s) 144, 165
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 71, 179
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 10, 14
BspCNI CTCAG 2 cut(s) 145, 166
BspDI ATCGAT 1 cut(s) 13
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 10, 14
Bst2UI CCWGG 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 153, 174
BstENI CCTNNNNNAGG 2 cut(s) 69, 177
BstKTI GATC 2 cut(s) 13, 17
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 10, 14
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 13
BsuTUI ATCGAT 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 13
CviAII CATG 2 cut(s) 18, 124
CviJI RGCY 4 cut(s) 102, 120, 138, 157
CviKI_1 RGCY 4 cut(s) 102, 120, 138, 157
DdeI CTNAG 2 cut(s) 153, 174
DpnI GATC 2 cut(s) 12, 16
DpnII GATC 2 cut(s) 10, 14
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 2 cut(s) 69, 177
EcoRII CCWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 2 cut(s) 21, 127
FaiI YATR 3 cut(s) 19, 62, 125
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 17, 123
Fnu4HI GCNGC 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 21, 127
HinfI GANTC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 153, 174
Hsp92II CATG 2 cut(s) 21, 127
Kzo9I GATC 2 cut(s) 10, 14
LmnI GCTCC 2 cut(s) 52, 226
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 232
MalI GATC 2 cut(s) 12, 16
MboI GATC 2 cut(s) 10, 14
MboII GAAGA 1 cut(s) 249
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 237
MnlI CCTC 3 cut(s) 75, 154, 180
MslI CAYNNNNRTG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 10, 14
NlaIII CATG 2 cut(s) 21, 127
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspPI GGNCC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 128
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 10, 14
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 159
SetI ASST 5 cut(s) 58, 104, 154, 165, 212
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 184
TaqI TCGA 2 cut(s) 13, 104
TasI AATT 1 cut(s) 237
TfiI GAWTC 1 cut(s) 75
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 182
XagI CCTNNNNNAGG 2 cut(s) 69, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.