Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19567738 .. 19568203

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGGTCCGACCCAATCAGACGGCCGACAACTCATCGGCCACGCACCAGCAGCGTCAGCGCCATACAGCAGCAACTAGTCAGAAAAAGCCTCCTGCTTCTTCCATCCCCGTCGACACCACCTCCGTTTCTCAAAGGCTTCAGAAGGAGTTGATGTCTCTCATGGTATGCTCTCTCTCTCTCTCTCTATCTCTCTCAATTCTTTGTTTTTTATTTTTCCTCAAATTTTCAAATTTGTGTACTTATTTTTTCGATGTCTTGCTGTCGTTGTTGATTTTTGTTGAAATCTCGAATTGTGTTTTATGTGGAAGCAAATTTAAGTTCATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

111

Amino Acids

12.32

Weight (kDa)

8.97

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	24, 39
AcsI	RAATTY	3 cut(s)	224, 232, 314
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	231, 284
AhlI	ACTAGT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	24, 39
ApeKI	GCWGC	2 cut(s)	52, 71
ApoI	RAATTY	3 cut(s)	224, 232, 314
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	64, 83
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	2 cut(s)	53, 72
BlsI	GCNGC	2 cut(s)	54, 73
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 140, 170
BseGI	GGATG	1 cut(s)	105
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	64, 83
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	26, 41
BsiEI	CGRYCG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	26, 41
BspANI	GGCC	2 cut(s)	26, 41
BstF5I	GGATG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	162
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 58
BstV1I	GCAGC	2 cut(s)	64, 83
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	26, 41
BtsCI	GGATG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	4 cut(s)	26, 41, 91, 139
CviKI_1	RGCY	4 cut(s)	26, 41, 91, 139
CviQI	GTAC	1 cut(s)	240
EaeI	YGGCCR	2 cut(s)	24, 39
EagI	CGGCCG	1 cut(s)	24
EclXI	CGGCCG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	7
Eco52I	CGGCCG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	125
FaeI	CATG	1 cut(s)	166
FaiI	YATR	5 cut(s)	66, 164, 169, 304, 326
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	53, 72
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	53, 72
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	53, 72
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	26, 41
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	115, 240
Hpy188I	TCNGA	4 cut(s)	11, 21, 84, 144
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	115, 240
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 58
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	61
LpnPI	CCDG	2 cut(s)	62, 108
Lsp1109I	GCAGC	2 cut(s)	64, 83
MaeI	CTAG	1 cut(s)	78
MboII	GAAGA	1 cut(s)	93
MluCI	AATT	5 cut(s)	198, 224, 232, 292, 314
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	102, 133, 230
MseI	TTAA	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	52, 58
NlaIII	CATG	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	54, 73
PspPI	GGNCC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	53, 72
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	2 cut(s)	9, 125
SgeI	CNNG	8 cut(s)	55, 61, 90, 107, 122, 175, 271, 301
SinI	GGWCC	1 cut(s)	7
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	5 cut(s)	198, 224, 232, 292, 314
SspMI	CTAG	1 cut(s)	78
TaqI	TCGA	3 cut(s)	114, 252, 290
TasI	AATT	5 cut(s)	198, 224, 232, 292, 314
TatI	WGTACW	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	2 cut(s)	52, 71
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	3 cut(s)	224, 232, 314
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.