pycom07g17940

Plant protein 1589 of unknown function (A_thal_3526)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
20487675 .. 20488038
364 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGATTTTTCTATTCAGCCTTGTGCCACTGCACCTTTTGCACACCCCCTCTGTCCAATACCATGCACGCAAGTGCGTTGCTCAATTATTAGTCACCATAAATATTCAAGTTCAACGATTTCTTTTTGCTGCAGTATGGAATGAATTAGAGAAAGAGAACAAGGAATTCTTCAAGGCTTATTACGCACAATCACAAAACAAACTAGATACAATGTCTAAGCAAGAGACGAGCCAACTGATAAAAAAACATGATACCGGAATATTCCTCCGAACATTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

11.06

Weight (kDa)

9.42

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 25 - 62 2.4e-09 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 164
AgsI TTSAA 3 cut(s) 107, 113, 172
AleI CACNNNNGTG 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 85
BbvI GCAGC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 254
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 218
BsmBI CGTCTC 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 218
BstMWI GCNNNNNNNGC 2 cut(s) 37, 182
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 67
CviAII CATG 2 cut(s) 62, 248
CviJI RGCY 3 cut(s) 18, 176, 231
CviKI_1 RGCY 3 cut(s) 18, 176, 231
DdeI CTNAG 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 65, 251
FaiI YATR 4 cut(s) 63, 98, 136, 249
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 2 cut(s) 61, 247
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 129
HapII CCGG 1 cut(s) 255
Hin1II CATG 2 cut(s) 65, 251
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 31, 40, 65, 131
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 182
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 2 cut(s) 65, 251
LpnPI CCDG 2 cut(s) 262, 268
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 1 cut(s) 160
MluCI AATT 3 cut(s) 83, 143, 164
MnlI CCTC 2 cut(s) 58, 275
MslI CAYNNNNRTG 2 cut(s) 70, 277
MspI CCGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 37, 182
NlaIII CATG 2 cut(s) 65, 251
NmuCI GTSAC 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 70
PkrI GCNGC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 70, 277
SatI GCNGC 1 cut(s) 129
SetI ASST 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 70, 277
Sse9I AATT 3 cut(s) 83, 143, 164
SspI AATATT 2 cut(s) 103, 261
SspMI CTAG 1 cut(s) 203
TasI AATT 3 cut(s) 83, 143, 164
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 33
XapI RAATTY 1 cut(s) 164
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.