Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20574196 .. 20574830

Gene Structure 635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCAGCTGCATAATGTTAGAGTGAGATTTTTACCCACAAATAAAACAGACATCCATGATTTGGGTCCAATGGAACAGGTTGTGACCGATCTGGTGAGGCATAAACTTGCTGCACCAAACCAATATGCAACTATATTTGGCGCCGAGGAGAAAAACATAGATGGGAAAAATTATTACACCGTTGAGTATGGACTTGAAGTCTTGAATCTCCAAACTTCGCTACCACTTCATTCGCAACTATTGCCATTGGAAACGGGAGATATTACACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

91

Amino Acids

10.19

Weight (kDa)

5.39

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	3 - 68	5.2e-13	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	197, 205
AhdI	GACNNNNNGTC	1 cut(s)	197
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	4, 7, 110
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	16, 97
BccI	CCATC	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	3 cut(s)	5, 8, 111
BlsI	GCNGC	3 cut(s)	6, 9, 112
Bme18I	GGWCC	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	66, 142
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	16, 97
BsgI	GTGCAG	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	66, 142
BspT107I	GGYRCC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	16, 97
BtsCI	GGATG	1 cut(s)	51
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	1 cut(s)	7
CviKI_1	RGCY	1 cut(s)	7
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DriI	GACNNNNNGTC	1 cut(s)	197
Eam1105I	GACNNNNNGTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	65
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
FaeI	CATG	1 cut(s)	59
FaiI	YATR	7 cut(s)	12, 57, 102, 126, 134, 158, 189
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	5, 8, 111
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	5, 8, 111
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	3 cut(s)	5, 8, 111
HaeII	RGCGCY	1 cut(s)	144
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	4, 10, 113, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	2 cut(s)	62, 77
Lsp1109I	GCAGC	2 cut(s)	16, 97
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MluCI	AATT	1 cut(s)	169
Mly113I	GGCGCC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	90, 139
MspA1I	CMGCKG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	241
NarI	GGCGCC	1 cut(s)	141
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	66, 142
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	6, 9, 112
PluTI	GGCGCC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	66, 142
PspPI	GGNCC	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	7
SatI	GCNGC	3 cut(s)	5, 8, 111
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	65
SetI	ASST	2 cut(s)	9, 81
SfoI	GGCGCC	1 cut(s)	142
SgeI	CNNG	8 cut(s)	68, 89, 104, 119, 157, 206, 214, 267
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	1 cut(s)	169
SspDI	GGCGCC	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	4, 7, 110
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.