pycom07g18170

2-oxoglutarate dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
20657126 .. 20657638
513 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
ATGGCGTGGTTTAGAGCAGTGTCTAGTGTGGCAAAGTTTGCCGTTAGGAGAAATTTATCAAATTGTGGATCATATATGGCTAGGAGACGGGTTCTTCCGTCTCAAAATCGGGACTTTCACACCACATTATGTAAATCGAAGGCTCAATCTGCCCCGATTCCACGCCCTGTACCCCTCTCTAGACTAAATGATAGTTTCTTGGATGGAACCAGTAGTGTTTATTTGGAGGGGCTTCAGAGGGATTGGGAAGCCGACCCAAATAGTGTTGATGAGTCTTGGGACAATTTCTTTAGGAATTTTGTAGGTCAGGCCTCTACCTCGCCCGGAGTTTCAGGCCAAACCATTCAAGAGAGCATGCGCTTGTTGTTGCTTGTGAGGGCATACCAGGTTAGTGGTCACATGAAAGCTCAGTTGGACCCTTTGGGTTTGGAAGAGAGAGATATCCCAGATGATTTGGACCCTGCTCTATATGGGTTCACAGAGGCTGATCTTGATCAAGGGAGTTCTTTTTAG

Protein Analysis

171

Amino Acids

19.01

Weight (kDa)

5.37

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-oxogl_dehyd_N PF16078 64 - 101 8.1e-15 2-oxoglutarate dehydrogenase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 2 cut(s) 52, 295
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 171
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
Alw26I GTCTC 2 cut(s) 79, 105
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 309, 334
ApoI RAATTY 2 cut(s) 52, 295
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 415, 457
AsuC2I CCSGG 1 cut(s) 324
AvaII GGWCC 2 cut(s) 415, 457
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 386
BclI TGATCA 1 cut(s) 493
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 79, 105
BfaI CTAG 3 cut(s) 24, 81, 180
Bme1390I CCNGG 2 cut(s) 324, 386
Bme18I GGWCC 2 cut(s) 415, 457
BmgT120I GGNCC 2 cut(s) 415, 457
BmiI GGNNCC 3 cut(s) 208, 417, 459
BmrFI CCNGG 2 cut(s) 324, 386
BpuMI CCSGG 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 492
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 210
BshFI GGCC 2 cut(s) 311, 336
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 2 cut(s) 125, 293
BsmAI GTCTC 2 cut(s) 79, 105
BsmBI CGTCTC 2 cut(s) 79, 105
BsmFI GGGAC 2 cut(s) 125, 293
BsnI GGCC 2 cut(s) 311, 336
Bsp143I GATC 3 cut(s) 68, 487, 493
BspANI GGCC 2 cut(s) 311, 336
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 3 cut(s) 208, 417, 459
BspPI GGATC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 210
BssMI GATC 3 cut(s) 68, 487, 493
Bst2UI CCWGG 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 3 cut(s) 71, 490, 496
BstMAI GTCTC 2 cut(s) 79, 105
BstMBI GATC 3 cut(s) 68, 487, 493
BstMWI GCNNNNNNNGC 2 cut(s) 38, 149
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 322, 384
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 2 cut(s) 311, 336
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 356
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 415, 457
CsiI ACCWGGT 1 cut(s) 384
Csp6I GTAC 1 cut(s) 170
CviAII CATG 2 cut(s) 355, 400
CviJI RGCY 8 cut(s) 80, 143, 232, 251, 311, 336, 407, 485
CviKI_1 RGCY 8 cut(s) 80, 143, 232, 251, 311, 336, 407, 485
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 408
DpnI GATC 3 cut(s) 70, 489, 495
DpnII GATC 3 cut(s) 68, 487, 493
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 311
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 415, 457
Eco57I CTGAAG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 384
EcoRV GATATC 1 cut(s) 442
Esp3I CGTCTC 2 cut(s) 79, 105
FaeI CATG 2 cut(s) 358, 403
FaiI YATR 9 cut(s) 73, 75, 77, 130, 356, 382, 401, 469, 471
FaqI GGGAC 2 cut(s) 125, 293
FatI CATG 2 cut(s) 354, 399
FbaI TGATCA 1 cut(s) 493
FokI GGATG 1 cut(s) 215
FspBI CTAG 3 cut(s) 24, 81, 180
GlaI GCGC 1 cut(s) 359
HaeIII GGCC 2 cut(s) 311, 336
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 358, 403
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HinfI GANTC 2 cut(s) 157, 272
HpaII CCGG 1 cut(s) 324
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 4 cut(s) 110, 180, 347, 491
Hpy8I GTNNAC 1 cut(s) 477
HpyAV CCTTC 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 149
HpyF3I CTNAG 1 cut(s) 408
Hsp92II CATG 2 cut(s) 358, 403
HspAI GCGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 3 cut(s) 68, 487, 493
LpnPI CCDG 9 cut(s) 180, 223, 293, 318, 337, 371, 398, 459, 474
MabI ACCWGGT 1 cut(s) 384
MaeI CTAG 3 cut(s) 24, 81, 180
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 70, 489, 495
MboI GATC 3 cut(s) 68, 487, 493
MboII GAAGA 2 cut(s) 86, 443
MluCI AATT 4 cut(s) 52, 61, 283, 295
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 7 cut(s) 185, 220, 231, 322, 328, 369, 475
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 324, 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 38, 149
NciI CCSGG 1 cut(s) 324
NdeII GATC 3 cut(s) 68, 487, 493
NlaIII CATG 2 cut(s) 358, 403
NlaIV GGNNCC 3 cut(s) 208, 417, 459
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 358
PaeI GCATGC 1 cut(s) 358
PceI AGGCCT 1 cut(s) 311
PfeI GAWTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 3 cut(s) 208, 417, 459
PspPI GGNCC 2 cut(s) 415, 457
PstNI CAGNNNCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 68, 487, 493
Sau96I GGNCC 2 cut(s) 415, 457
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 324, 386
SetI ASST 4 cut(s) 307, 320, 390, 409
SexAI ACCWGGT 1 cut(s) 384
SinI GGWCC 2 cut(s) 415, 457
SphI GCATGC 1 cut(s) 358
Sse9I AATT 4 cut(s) 52, 61, 283, 295
SseBI AGGCCT 1 cut(s) 311
SspMI CTAG 3 cut(s) 24, 81, 180
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 322, 384
TaqI TCGA 1 cut(s) 137
TasI AATT 4 cut(s) 52, 61, 283, 295
TfiI GAWTC 1 cut(s) 157
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 2 cut(s) 415, 457
XapI RAATTY 2 cut(s) 52, 295
XbaI TCTAGA 1 cut(s) 179
XceI RCATGY 1 cut(s) 358
XspI CTAG 3 cut(s) 24, 81, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.