Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20835617 .. 20839091

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATTTACAAGTTGGGCGGCGGGAGTGGCATCCGGCATAAGGTTAAATTTATTGTTGGCATATCCCCCCTCCTCCTTTCTCTATTAAAATCCAACCCAAAATCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCCTCTCTCTCTGCGTTTCCCATGGCTACGGCTCCTTCTTCCCAGGCCAGCCTCCTCCTCCAAAAGCAACTCAAAGCGATCTCTGCAAACACCCAGTTGATGGATTCTCGGCAGGTTTGGTGAACGAAGACAACATCTTCGAATGGAACGTCACGATTATTGGCCCACCCGACACTCTCTATGAGGGCGGTTTCTTTAATGCCATCATGAGTTTCCCCGAGGATTATCCGTGCAACCCTCCTATAGTGAGATTTACCTCAGAGATGTGGCACCCCAATGTTTACTCGGATGGAAAGGTTTGTGTTTCAATTCTTCATCCCCCTGGTGACGATCCAAATGGCTACGAGCTTGCAACTGAGCGCTGGAATCCAGTCCATACAGTTGAGAGTATTCTTTTGAGTATAATCTCAATGCTTTCAAGCCCTAATGATGAATCTCCTGCGAATGTCGATGCTGCGAAACAATGGAGAGAGAGTAGGGACGAGTTCAGGAAGAAAGTAGGGCGGTGTGTCAGAAAGTCTCAAGAAATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

228

Amino Acids

24.98

Weight (kDa)

6.06

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	76 - 219	1.3e-49	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	4 cut(s)	18, 21, 336, 652
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	47
AfeI	AGCGCT	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	40, 248
AgsI	TTSAA	2 cut(s)	456, 567
AjnI	CCWGG	2 cut(s)	190, 469
AluBI	AGCT	1 cut(s)	496
AluI	AGCT	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	365
Aor51HI	AGCGCT	1 cut(s)	509
AoxI	GGCC	2 cut(s)	193, 310
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	4 cut(s)	269, 282, 301, 314
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	280, 485
AsuII	TTCGAA	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	3 cut(s)	242, 359, 431
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	2 cut(s)	192, 471
BcoDI	GTCTC	1 cut(s)	672
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	19, 603
BlsI	GCNGC	2 cut(s)	20, 604
Bme1390I	CCNGG	2 cut(s)	192, 471
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	181, 419
BmrFI	CCNGG	2 cut(s)	192, 471
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	39, 589
BmuI	ACTGGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	654
BsaJI	CCNNGG	4 cut(s)	169, 190, 366, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 248
Bse1I	ACTGG	2 cut(s)	242, 518
BseBI	CCWGG	2 cut(s)	192, 471
BseDI	CCNNGG	4 cut(s)	169, 190, 366, 469
BseGI	GGATG	3 cut(s)	30, 442, 463
BseLI	CCNNNNNNNGG	2 cut(s)	40, 248
BseMII	CTCAG	2 cut(s)	420, 495
BseNI	ACTGG	2 cut(s)	242, 518
BseRI	GAGGAG	5 cut(s)	62, 133, 140, 192, 195
BseXI	GCAGC	1 cut(s)	589
BshFI	GGCC	2 cut(s)	195, 312
BshNI	GGYRCC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	40, 248
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	195, 312
BsoBI	CYCGRG	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	226, 478
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	4 cut(s)	18, 21, 336, 652
BspANI	GGCC	2 cut(s)	195, 312
BspCNI	CTCAG	2 cut(s)	419, 496
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	181, 419
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	242, 518
BssECI	CCNNGG	4 cut(s)	169, 190, 366, 469
BssMI	GATC	2 cut(s)	226, 478
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	192, 471
Bst4CI	ACNGT	1 cut(s)	529
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	197, 498
BstDEI	CTNAG	2 cut(s)	406, 504
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	3 cut(s)	30, 442, 463
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	229, 481
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	2 cut(s)	226, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 231
BstNI	CCWGG	2 cut(s)	192, 471
BstSCI	CCNGG	2 cut(s)	190, 469
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	195, 312
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	30, 442, 463
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	197, 498
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	311
CviAII	CATG	2 cut(s)	170, 355
CviJI	RGCY	8 cut(s)	174, 180, 195, 199, 312, 489, 496, 570
CviKI_1	RGCY	8 cut(s)	174, 180, 195, 199, 312, 489, 496, 570
DdeI	CTNAG	2 cut(s)	406, 504
DpnI	GATC	2 cut(s)	228, 480
DpnII	GATC	2 cut(s)	226, 478
Eco130I	CCWWGG	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	190, 469
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	173, 358
FaiI	YATR	9 cut(s)	39, 62, 171, 330, 356, 392, 525, 551, 682
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	2 cut(s)	169, 354
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	19, 603
FokI	GGATG	3 cut(s)	17, 449, 450
Fsp4HI	GCNGC	2 cut(s)	19, 603
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	2 cut(s)	19, 603
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	195, 312
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	2 cut(s)	173, 358
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	3 cut(s)	252, 514, 581
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	280, 485
Hpy166II	GTNNAC	2 cut(s)	271, 430
Hpy188I	TCNGA	3 cut(s)	409, 436, 662
Hpy188III	TCNNGA	4 cut(s)	301, 355, 637, 671
Hpy8I	GTNNAC	2 cut(s)	271, 430
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	234, 381, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 231
HpyF3I	CTNAG	2 cut(s)	406, 504
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	173, 358
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	226, 478
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	2 cut(s)	39, 589
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	298, 473
MalI	GATC	2 cut(s)	228, 480
MboI	GATC	2 cut(s)	226, 478
MboII	GAAGA	6 cut(s)	96, 178, 277, 287, 452, 652
MluCI	AATT	2 cut(s)	47, 456
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	3 cut(s)	45, 86, 345
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	192, 471
MvaI	CCWGG	2 cut(s)	192, 471
MwoI	GCNNNNNNNGC	2 cut(s)	27, 231
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	226, 478
NlaIII	CATG	2 cut(s)	173, 358
NlaIV	GGNNCC	2 cut(s)	181, 419
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	298, 473
NspV	TTCGAA	1 cut(s)	288
PagI	TCATGA	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	252, 514, 581
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	20, 604
Psp6I	CCWGG	2 cut(s)	190, 469
PspGI	CCWGG	2 cut(s)	190, 469
PspN4I	GGNNCC	2 cut(s)	181, 419
PspPI	GGNCC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	45, 86, 345
SatI	GCNGC	2 cut(s)	19, 603
Sau3AI	GATC	2 cut(s)	226, 478
Sau96I	GGNCC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	192, 471
SetI	ASST	6 cut(s)	45, 265, 300, 407, 447, 498
SfaNI	GCATC	2 cut(s)	39, 589
SfcI	CTRYAG	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	2 cut(s)	47, 456
SsiI	CCGC	4 cut(s)	18, 21, 336, 652
StyD4I	CCNGG	2 cut(s)	190, 469
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	288, 597
TasI	AATT	2 cut(s)	47, 456
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	252, 514, 581
Tru1I	TTAA	3 cut(s)	45, 86, 345
Tru9I	TTAA	3 cut(s)	45, 86, 345
TseFI	GTSAC	2 cut(s)	298, 473
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	2 cut(s)	298, 473
TspDTI	ATGAA	2 cut(s)	452, 594
TspGWI	ACGGA	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.