pycom07g18420

ubiquitin-protein transferase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
20861672 .. 20863168
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGTTTCCGGAGAGTCTGAATATGGTCCTGCACTTTTTCTCATCATTCAGCTTGTGGCGGTCATAGCCATCTGGTGGTGTTGCCGTTGCTGCTGCGAGAATATTCCCCCTGAAGAACCGATACAACGACAATTGGAAGATGATGAAATGCAAAAGACCACAGCAGCAAGCAGCACAAGGACTACTACTGCTTCACCGGTAATCCAAAAGTATGAAAAGGGTGTTAGCCTGGTTGGAGGGTTTCTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.17

Weight (kDa)

4.57

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 75
AgeI ACCGGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Aor13HI TCCGGA 1 cut(s) 8
ApeKI GCWGC 4 cut(s) 90, 93, 164, 171
AsiGI ACCGGT 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
BbvI GCAGC 4 cut(s) 77, 80, 176, 183
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 230
BisI GCNGC 4 cut(s) 91, 94, 165, 172
BlsI GCNGC 4 cut(s) 92, 95, 166, 173
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 230
BsaWI WCCGGW 2 cut(s) 8, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 75
BseXI GCAGC 4 cut(s) 77, 80, 176, 183
BsgI GTGCAG 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 196
BsiSI CCGG 2 cut(s) 9, 197
BslI CCNNNNNNNGG 1 cut(s) 75
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 1 cut(s) 59
BspEI TCCGGA 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 65, 90
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 77, 80, 176, 183
Cac8I GCNNGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 26
CspAI ACCGGT 1 cut(s) 196
CviJI RGCY 3 cut(s) 52, 68, 228
CviKI_1 RGCY 3 cut(s) 52, 68, 228
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 228
FaiI YATR 3 cut(s) 24, 65, 213
Fnu4HI GCNGC 4 cut(s) 91, 94, 165, 172
Fsp4HI GCNGC 4 cut(s) 91, 94, 165, 172
GluI GCNGC 4 cut(s) 91, 94, 165, 172
HapII CCGG 2 cut(s) 9, 197
HinfI GANTC 1 cut(s) 14
HpaII CCGG 2 cut(s) 9, 197
HphI GGTGA 1 cut(s) 186
Hpy188I TCNGA 3 cut(s) 19, 246, 251
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 32, 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 90
Kpn2I TCCGGA 1 cut(s) 8
Kzo9I GATC 1 cut(s) 246
LpnPI CCDG 7 cut(s) 22, 42, 58, 123, 210, 215, 242
Lsp1109I GCAGC 4 cut(s) 77, 80, 176, 183
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 2 cut(s) 125, 149
MfeI CAATTG 1 cut(s) 131
MluCI AATT 1 cut(s) 131
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 1 cut(s) 230
MroI TCCGGA 1 cut(s) 8
MspI CCGG 2 cut(s) 9, 197
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 65, 90
NdeII GATC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 75
PinAI ACCGGT 1 cut(s) 196
PkrI GCNGC 4 cut(s) 92, 95, 166, 173
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspPI GGNCC 1 cut(s) 26
SatI GCNGC 4 cut(s) 91, 94, 165, 172
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 230
SetI ASST 1 cut(s) 54
SinI GGWCC 1 cut(s) 26
Sse9I AATT 1 cut(s) 131
SsiI CCGC 1 cut(s) 59
SspI AATATT 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 228
TasI AATT 1 cut(s) 131
TseI GCWGC 4 cut(s) 90, 93, 164, 171
TspDTI ATGAA 2 cut(s) 159, 228
Van91I CCANNNNNTGG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.