pycom07g19180

DA1-related

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
21509064 .. 21511227
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGAAACGTCTCGGTAAACTTTTCAGGAGTGGGCCTAGTCGTGGAGAAGCTGCCGAGCGTAGCAACCCGAATCCGCAGCTTAGTGGTGACGAAAACATGCTTTGGCGGGCGCTGCGTCGATCCTTGTTTCTTCTTCTTGGGATCATTAGAGTTATCTTGGATACTCTTCTTATTCAACATAACATGCCGAGAAATGTATACACGTTCCGAACTTGGATCAAGGCACTTGTAACTTTTATGAGAATCATTATATCCCACCTTACACATTCAATATATCGATTCATCAGTTTATTTTTGACATAA
Functional Annotation

Protein Analysis

101

Amino Acids

11.74

Weight (kDa)

11.71

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AciI CCGC 2 cut(s) 74, 106
AclWI GGATC 3 cut(s) 114, 149, 224
AfiI CCNNNNNNNGG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 176, 270
AluBI AGCT 2 cut(s) 50, 79
AluI AGCT 2 cut(s) 50, 79
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 3 cut(s) 114, 149, 224
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 50, 76, 112
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 98
BbvI GCAGC 3 cut(s) 37, 88, 99
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 113
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 3 cut(s) 51, 77, 113
BlsI GCNGC 3 cut(s) 52, 78, 114
BmgT120I GGNCC 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 37, 88, 99
BshFI GGCC 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 3 cut(s) 119, 141, 216
BspACI CCGC 2 cut(s) 74, 106
BspANI GGCC 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 277
BspPI GGATC 3 cut(s) 114, 149, 224
BssMI GATC 3 cut(s) 119, 141, 216
BssNAI GTATAC 1 cut(s) 199
Bst1107I GTATAC 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 122, 144, 219
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 119, 141, 216
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 100, 187
BstV1I GCAGC 3 cut(s) 37, 88, 99
BstZ17I GTATAC 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 277
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 34
BsuTUI ATCGAT 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 277
CseI GACGC 1 cut(s) 104
CviAII CATG 2 cut(s) 97, 184
CviJI RGCY 3 cut(s) 34, 50, 79
CviKI_1 RGCY 3 cut(s) 34, 50, 79
DdeI CTNAG 1 cut(s) 80
DpnI GATC 3 cut(s) 121, 143, 218
DpnII GATC 3 cut(s) 119, 141, 216
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 2 cut(s) 100, 187
FaiI YATR 8 cut(s) 98, 180, 185, 199, 239, 251, 274, 301
FatI CATG 2 cut(s) 96, 183
FauI CCCGC 1 cut(s) 99
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 51, 77, 113
Fsp4HI GCNGC 3 cut(s) 51, 77, 113
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 111
GluI GCNGC 3 cut(s) 51, 77, 113
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 1 cut(s) 34
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 100, 187
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 3 cut(s) 70, 243, 279
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 17, 199
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 17, 199
Hpy99I CGWCG 1 cut(s) 120
HpyCH4IV ACGT 2 cut(s) 7, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 7, 203
Hsp92II CATG 2 cut(s) 100, 187
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 3 cut(s) 119, 141, 216
LpnPI CCDG 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 37, 88, 99
MaeI CTAG 1 cut(s) 36
MaeII ACGT 2 cut(s) 7, 203
MaeIII GTNAC 2 cut(s) 86, 229
MalI GATC 3 cut(s) 121, 143, 218
MboI GATC 3 cut(s) 119, 141, 216
MboII GAAGA 3 cut(s) 122, 125, 158
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 3 cut(s) 119, 141, 216
NlaIII CATG 2 cut(s) 100, 187
NmeAIII GCCGAG 2 cut(s) 79, 213
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 2 cut(s) 100, 187
PfeI GAWTC 3 cut(s) 70, 243, 279
PkrI GCNGC 3 cut(s) 52, 78, 114
PspPI GGNCC 1 cut(s) 32
SatI GCNGC 3 cut(s) 51, 77, 113
Sau3AI GATC 3 cut(s) 119, 141, 216
Sau96I GGNCC 1 cut(s) 32
SetI ASST 5 cut(s) 10, 52, 81, 206, 261
SsiI CCGC 2 cut(s) 74, 106
SspMI CTAG 1 cut(s) 36
TaiI ACGT 2 cut(s) 10, 206
TaqI TCGA 2 cut(s) 118, 277
TfiI GAWTC 3 cut(s) 70, 243, 279
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 3 cut(s) 50, 76, 112
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 17, 271
XceI RCATGY 2 cut(s) 100, 187
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.