pycom07g19660

Coronatine-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
21963198 .. 21963698
501 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGTATATATCGGACATCACCAATGCATCTCTGGAATACATTGGGAGTCACTCCAAAAATCTCTGTGATTTTCGCCTTTTCTGGCTTGACCAAGAAGAGACGATAACAGATTTGCCACTTGACAATGGGGTTCGAGCGCTTTTGAGGGGATGCCAGCAGCTTCGAAGGTTTGCTCTGTATCTCCGTCCTGGGGGGTTGACTGACCTCGGACTGAGTTACGTTGGCCAGTACAGTCAGAATGTGAGACGGATGGTTCTGGGTAATGTTGGGGAATCTGATGCAGGGCTTTTGGAATTCTCAAAGGGTTGCCCCAGCCTGCAAAAATTGGAAATGAGGGTTTGCTGCTTCAGCGAGCGTGCACTCGCTGATGCAGTAATGCAACTGACTTCCCTTAGGTATTTGTGGGTGCAGGGGTACCACAGTATCTGCTACTGGTCGCGACCTTTTGGCAATGGCTTGCCCGTTTTGGAATATCGAGTTGTTTCCTGGCAGAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box-like

Protein Analysis

167

Amino Acids

18.95

Weight (kDa)

7.58

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 414
AccII CGCG 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 331
AfaI GTAC 2 cut(s) 230, 416
AfeI AGCGCT 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 190
AjnI CCWGG 2 cut(s) 187, 485
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 92, 238
Alw44I GTGCAC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 426
Aor51HI AGCGCT 1 cut(s) 138
AoxI GGCC 1 cut(s) 223
ApaLI GTGCAC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 157, 342
ApoI RAATTY 1 cut(s) 293
Asp718I GGTACC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 10
AsuII TTCGAA 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 361
BaeI ACNNNNGTAYC 4 cut(s) 406, 406, 439, 439
BalI TGGCCA 1 cut(s) 225
BanI GGYRCC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 169, 329
BccI CCATC 1 cut(s) 244
BciT130I CCWGG 2 cut(s) 189, 487
BcoDI GTCTC 2 cut(s) 92, 238
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 2 cut(s) 158, 343
BlsI GCNGC 2 cut(s) 159, 344
Bme1390I CCNGG 2 cut(s) 189, 487
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 2 cut(s) 189, 487
BmsI GCATC 4 cut(s) 35, 140, 268, 358
Bpu14I TTCGAA 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 188, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 226, 437
Bse21I CCTNAGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 2 cut(s) 189, 487
BseDI CCNNGG 2 cut(s) 188, 205
BseGI GGATG 2 cut(s) 155, 255
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 226, 437
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 2 cut(s) 169, 329
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 92, 238
BsmBI CGTCTC 2 cut(s) 92, 238
BsnI GGCC 1 cut(s) 225
Bsp119I TTCGAA 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 361
Bsp68I TCGCGA 1 cut(s) 439
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 416
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 2 cut(s) 226, 437
BssECI CCNNGG 2 cut(s) 188, 205
Bst2UI CCWGG 2 cut(s) 189, 487
Bst4CI ACNGT 2 cut(s) 233, 422
Bst6I CTCTTC 2 cut(s) 90, 488
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 5 cut(s) 155, 317, 353, 357, 458
BstDEI CTNAG 2 cut(s) 212, 392
BstF5I GGATG 2 cut(s) 155, 255
BstFNI CGCG 1 cut(s) 439
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 92, 238
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 2 cut(s) 189, 487
BstSCI CCNGG 2 cut(s) 187, 485
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 2 cut(s) 169, 329
Bsu36I CCTNAGG 1 cut(s) 392
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 2 cut(s) 155, 255
BtuMI TCGCGA 1 cut(s) 439
Cac8I GCNNGC 5 cut(s) 155, 317, 353, 357, 458
CaiI CAGNNNCTG 1 cut(s) 426
CfoI GCGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 229, 415
CviJI RGCY 6 cut(s) 85, 160, 225, 286, 315, 456
CviKI_1 RGCY 6 cut(s) 85, 160, 225, 286, 315, 456
CviQI GTAC 2 cut(s) 229, 415
DdeI CTNAG 2 cut(s) 212, 392
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 90, 488
EarI CTCTTC 2 cut(s) 90, 488
Eco47III AGCGCT 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 331
Eco81I CCTNAGG 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 187, 485
EcoT22I ATGCAT 1 cut(s) 28
Esp3I CGTCTC 2 cut(s) 92, 238
FaiI YATR 2 cut(s) 6, 8
Fnu4HI GCNGC 2 cut(s) 158, 343
FokI GGATG 2 cut(s) 162, 262
Fsp4HI GCNGC 2 cut(s) 158, 343
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 158, 343
GsaI CCCAGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 1 cut(s) 225
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 2 cut(s) 46, 272
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 198, 359
Hpy188I TCNGA 4 cut(s) 13, 209, 237, 277
Hpy188III TCNNGA 2 cut(s) 32, 438
Hpy8I GTNNAC 2 cut(s) 198, 359
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 2 cut(s) 233, 422
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 7 cut(s) 26, 281, 319, 359, 371, 379, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 2 cut(s) 212, 392
HpySE526I ACGT 1 cut(s) 219
HspAI GCGC 1 cut(s) 137
KpnI GGTACC 1 cut(s) 418
Lsp1109I GCAGC 2 cut(s) 169, 329
LweI GCATC 4 cut(s) 35, 140, 268, 358
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 47, 215
MboII GAAGA 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 361
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 2 cut(s) 293, 323
MluNI TGGCCA 1 cut(s) 225
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 3 cut(s) 138, 215, 327
Mox20I TGGCCA 1 cut(s) 225
Mph1103I ATGCAT 1 cut(s) 28
MscI TGGCCA 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 189, 487
MvaI CCWGG 2 cut(s) 189, 487
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 348
NlaIV GGNNCC 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 47
NruI TCGCGA 1 cut(s) 439
NsiI ATGCAT 1 cut(s) 28
NspV TTCGAA 1 cut(s) 163
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 159, 344
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 187, 485
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 2 cut(s) 187, 485
PspN4I GGNNCC 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 426
RruI TCGCGA 1 cut(s) 439
RsaI GTAC 2 cut(s) 230, 416
RsaNI GTAC 2 cut(s) 229, 415
SatI GCNGC 2 cut(s) 158, 343
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 189, 487
SduI GDGCHC 1 cut(s) 361
SetI ASST 6 cut(s) 162, 170, 207, 222, 398, 445
SfaNI GCATC 4 cut(s) 35, 140, 268, 358
SfuI TTCGAA 1 cut(s) 163
Sse9I AATT 2 cut(s) 293, 323
StyD4I CCNGG 2 cut(s) 187, 485
TaaI ACNGT 2 cut(s) 233, 422
TaiI ACGT 1 cut(s) 222
TaqI TCGA 3 cut(s) 133, 163, 475
TasI AATT 2 cut(s) 293, 323
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 272
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 157, 342
Tsp45I GTSAC 1 cut(s) 47
TspGWI ACGGA 2 cut(s) 173, 262
VneI GTGCAC 1 cut(s) 357
XapI RAATTY 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.