Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22082147 .. 22084562

Gene Structure 2416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCCCCTAAACCCTCCAAGGCCGACAAGAAGATAGCCTACGATTCCAAGCTCTGCTCCCTCCTCGACGAGTATGGCCAGGTCCTAATTGTCGCCGCCGACAACGTCGGCTCCAAGCAGCTCCAGAACATCCGCAAGGGGCTGCGCGGAGATTCCGTCGTTCTGATGGGGAAGAACACGATGATGAAAAGGTCCGTCAGGATCCATGCGGAGAAGACGGGCAACAGTGCTTACCTCAACCTCGTCCCTCTCCTTGTGGGCAACGTCGGCCTGATTTTCACAAAGGGTGATTTGAAGGAAGTCAGCGAAGAGGTTGGCAAGTACAAGGTTGGAGCCCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTGGTTCCTCCTGGTAACACTGGTCTTGACCCATCTCAGACCTCTTTCTTCCAGGTGCTCAACATCCCCACTAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTTGAACTTATCAAGAAGGGAGATAAGGTTGGCTCTTCTGAGGCTGCCCTCCTTGCCAAGCTTGGAATCAGGCCATTCTCATATGGTCTTGTTGTCCAGATGGTGTATGACAATGGTTCCGTCTTCAGCCCAGAGGTGCTTGATCTAACATTTGAGGATCGATCTCATGGAGAAGTTTGCTTCTGGTGTCTCGATGGTTACTTCATTGGCATTGGCCATCTCATACCCCACCCTGGCAGCTGCACCACACATGTTCCTCAATGCTTACAAGAACGTATTGGCAGTTTCTATTGCCACCGAATATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGTATTGTGCTATTTTTCAACTGTTTTTGTCCATTTTTGCTGCAGCCCCTGTTGCTGCTGCTGCTTCAGGAGGTGCTCCAGCAGCTGCTAAGGAGGAAGAGAAGAAGCCCGAGCCCGAAGAGGAATCCGATGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGAAGCTATGGTTCATAGCTGAACTTGAGAGTGGAAATTCACATTTGCGTGGTTTAGTTTATTGCCGGGCACTATCATGTTTAATTTTTCTAATATCGGATATAATGTTTTTGGTAGTAGTGTGTTGGATATTTTGTTTATTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

378

Amino Acids

41.79

Weight (kDa)

9.16

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	8 - 108	2.1e-16	Ribosomal protein L10
RL10P_insert	PF17777	114 - 183	7e-22	Insertion domain in 60S ribosomal protein L10P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	96, 133, 147, 209
AclWI	GGATC	3 cut(s)	196, 209, 645
AcoI	YGGCCR	2 cut(s)	76, 694
AcsI	RAATTY	1 cut(s)	1021
AcuI	CTGAAG	2 cut(s)	589, 872
AfaI	GTAC	2 cut(s)	323, 460
AfiI	CCNNNNNNNGG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	4 cut(s)	295, 467, 485, 841
AjnI	CCWGG	4 cut(s)	78, 382, 423, 712
AluBI	AGCT	7 cut(s)	52, 121, 541, 720, 907, 991, 1004
AluI	AGCT	7 cut(s)	52, 121, 541, 720, 907, 991, 1004
Alw21I	GWGCWC	2 cut(s)	432, 900
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	3 cut(s)	196, 209, 645
AlwNI	CAGNNNCTG	2 cut(s)	871, 907
Ama87I	CYCGRG	1 cut(s)	931
AoxI	GGCC	6 cut(s)	3, 21, 76, 268, 551, 694
ApoI	RAATTY	1 cut(s)	1021
AseI	ATTAAT	1 cut(s)	1127
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	4, 82, 192
AsuC2I	CCSGG	1 cut(s)	1052
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	931
AvaII	GGWCC	2 cut(s)	82, 192
BaeGI	GKGCMC	1 cut(s)	1057
BalI	TGGCCA	2 cut(s)	78, 696
BamHI	GGATCC	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	337, 938
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	221, 595
Bbv12I	GWGCWC	2 cut(s)	432, 900
BccI	CCATC	5 cut(s)	160, 412, 574, 668, 705
BciT130I	CCWGG	4 cut(s)	80, 384, 425, 714
BcnI	CCSGG	1 cut(s)	1052
BcoDI	GTCTC	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	863
Bme1390I	CCNGG	5 cut(s)	80, 384, 425, 714, 1052
Bme18I	GGWCC	2 cut(s)	82, 192
BmeT110I	CYCGRG	1 cut(s)	931
BmgT120I	GGNCC	3 cut(s)	4, 82, 192
BmiI	GGNNCC	6 cut(s)	6, 112, 203, 334, 378, 598
BmrFI	CCNGG	5 cut(s)	80, 384, 425, 714, 1052
BpiI	GAAGAC	2 cut(s)	221, 595
BpmI	CTGGAG	2 cut(s)	107, 884
Bpu10I	CCTNAGC	1 cut(s)	911
BpuEI	CTTGAG	2 cut(s)	804, 1031
BpuMI	CCSGG	1 cut(s)	1052
Bsa29I	ATCGAT	1 cut(s)	640
BsaJI	CCNNGG	2 cut(s)	18, 712
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 141, 171, 492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	4 cut(s)	80, 384, 425, 714
BseCI	ATCGAT	1 cut(s)	640
BseDI	CCNNGG	2 cut(s)	18, 712
BseGI	GGATG	2 cut(s)	129, 435
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMII	CTCAG	2 cut(s)	422, 510
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	1057
BsgI	GTGCAG	1 cut(s)	706
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	6 cut(s)	5, 23, 78, 270, 553, 696
BshVI	ATCGAT	1 cut(s)	640
BsiHKAI	GWGCWC	2 cut(s)	432, 900
BsiHKCI	CYCGRG	1 cut(s)	931
BsiSI	CCGG	1 cut(s)	1051
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	6 cut(s)	5, 23, 78, 270, 553, 696
BsoBI	CYCGRG	1 cut(s)	931
Bsp1286I	GDGCHC	5 cut(s)	337, 432, 900, 938, 1057
Bsp143I	GATC	4 cut(s)	201, 622, 637, 641
BspACI	CCGC	4 cut(s)	96, 133, 147, 209
BspANI	GGCC	6 cut(s)	5, 23, 78, 270, 553, 696
BspCNI	CTCAG	2 cut(s)	421, 511
BspDI	ATCGAT	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	6 cut(s)	6, 112, 203, 334, 378, 598
BspMAI	CTGCAG	1 cut(s)	867
BspPI	GGATC	3 cut(s)	196, 209, 645
BspQI	GCTCTTC	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	18, 712
BssMI	GATC	4 cut(s)	201, 622, 637, 641
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	4 cut(s)	80, 384, 425, 714
Bst4CI	ACNGT	3 cut(s)	227, 463, 845
Bst6I	CTCTTC	4 cut(s)	303, 520, 914, 935
BstDEI	CTNAG	4 cut(s)	408, 444, 519, 911
BstF5I	GGATG	2 cut(s)	129, 435
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	4 cut(s)	204, 625, 640, 644
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	4 cut(s)	201, 622, 637, 641
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 533, 874, 883, 904
BstNI	CCWGG	4 cut(s)	80, 384, 425, 714
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	5 cut(s)	78, 382, 423, 712, 1050
BstSFI	CTRYAG	1 cut(s)	863
BstSLI	GKGCMC	1 cut(s)	1057
BstUI	CGCG	1 cut(s)	147
BstV2I	GAAGAC	2 cut(s)	221, 595
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	640
BsuRI	GGCC	6 cut(s)	5, 23, 78, 270, 553, 696
BsuTUI	ATCGAT	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	129, 435
BtsIMutI	CAGTG	2 cut(s)	232, 390
CaiI	CAGNNNCTG	2 cut(s)	871, 907
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	4, 82, 192
ClaI	ATCGAT	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	322, 459
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	4 cut(s)	206, 647, 731, 1062
CviQI	GTAC	2 cut(s)	322, 459
DdeI	CTNAG	4 cut(s)	408, 444, 519, 911
DpnI	GATC	4 cut(s)	203, 624, 639, 643
DpnII	GATC	4 cut(s)	201, 622, 637, 641
EaeI	YGGCCR	2 cut(s)	76, 694
Eam1104I	CTCTTC	4 cut(s)	303, 520, 914, 935
EarI	CTCTTC	4 cut(s)	303, 520, 914, 935
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	337, 938
Eco47I	GGWCC	2 cut(s)	82, 192
Eco57I	CTGAAG	2 cut(s)	589, 872
Eco88I	CYCGRG	1 cut(s)	931
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	4 cut(s)	78, 382, 423, 712
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	337, 938
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	4 cut(s)	209, 650, 734, 1065
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	4 cut(s)	205, 646, 730, 1061
FauNDI	CATATG	1 cut(s)	562
FokI	GGATG	2 cut(s)	116, 422
FriOI	GRGCYC	2 cut(s)	337, 938
GlaI	GCGC	1 cut(s)	146
GsuI	CTGGAG	2 cut(s)	107, 884
HaeIII	GGCC	6 cut(s)	5, 23, 78, 270, 553, 696
HapII	CCGG	1 cut(s)	1051
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	209, 650, 734, 1065
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	44, 152, 546, 946
HpaII	CCGG	1 cut(s)	1051
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	5 cut(s)	165, 411, 520, 951, 1084
Hpy188III	TCNNGA	7 cut(s)	124, 199, 398, 493, 577, 671, 890
Hpy99I	CGWCG	4 cut(s)	71, 110, 161, 269
HpyAV	CCTTC	4 cut(s)	289, 490, 797, 797
HpyCH4III	ACNGT	3 cut(s)	227, 463, 845
HpyCH4IV	ACGT	3 cut(s)	105, 264, 754
HpyCH4V	TGCA	2 cut(s)	723, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 533, 874, 883, 904
HpyF3I	CTNAG	4 cut(s)	408, 444, 519, 911
HpySE526I	ACGT	3 cut(s)	105, 264, 754
Hsp92II	CATG	4 cut(s)	209, 650, 734, 1065
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	201, 622, 637, 641
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	6 cut(s)	62, 116, 126, 332, 364, 903
MaeII	ACGT	3 cut(s)	105, 264, 754
MaeIII	GTNAC	2 cut(s)	386, 677
MalI	GATC	4 cut(s)	203, 624, 639, 643
MboI	GATC	4 cut(s)	201, 622, 637, 641
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	5 cut(s)	337, 432, 900, 938, 1057
MlsI	TGGCCA	2 cut(s)	78, 696
MluCI	AATT	4 cut(s)	87, 363, 1021, 1068
MluNI	TGGCCA	2 cut(s)	78, 696
MmeI	TCCRAC	2 cut(s)	310, 1091
Mox20I	TGGCCA	2 cut(s)	78, 696
MscI	TGGCCA	2 cut(s)	78, 696
MseI	TTAA	4 cut(s)	450, 984, 1067, 1127
MslI	CAYNNNNRTG	3 cut(s)	182, 1032, 1060
Msp20I	TGGCCA	2 cut(s)	78, 696
MspA1I	CMGCKG	2 cut(s)	720, 907
MspI	CCGG	1 cut(s)	1051
MspR9I	CCNGG	5 cut(s)	80, 384, 425, 714, 1052
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	4 cut(s)	80, 384, 425, 714
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	267, 533, 874, 883, 904
NciI	CCSGG	1 cut(s)	1052
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	4 cut(s)	201, 622, 637, 641
NlaIII	CATG	4 cut(s)	209, 650, 734, 1065
NlaIV	GGNNCC	6 cut(s)	6, 112, 203, 334, 378, 598
NspI	RCATGY	1 cut(s)	734
PciI	ACATGT	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	520
PfeI	GAWTC	4 cut(s)	44, 152, 546, 946
PflFI	GACNNNGTC	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	82
PscI	ACATGT	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	1127
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	4 cut(s)	78, 382, 423, 712
PspGI	CCWGG	4 cut(s)	78, 382, 423, 712
PspN4I	GGNNCC	6 cut(s)	6, 112, 203, 334, 378, 598
PspPI	GGNCC	3 cut(s)	4, 82, 192
PspPPI	RGGWCCY	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	867
PstNI	CAGNNNCTG	2 cut(s)	871, 907
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	2 cut(s)	720, 907
RsaI	GTAC	2 cut(s)	323, 460
RsaNI	GTAC	2 cut(s)	322, 459
RseI	CAYNNNNRTG	3 cut(s)	182, 1032, 1060
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	4 cut(s)	450, 984, 1067, 1127
Sau3AI	GATC	4 cut(s)	201, 622, 637, 641
Sau96I	GGNCC	3 cut(s)	4, 82, 192
ScrFI	CCNGG	5 cut(s)	80, 384, 425, 714, 1052
SduI	GDGCHC	5 cut(s)	337, 432, 900, 938, 1057
SfcI	CTRYAG	1 cut(s)	863
SinI	GGWCC	2 cut(s)	82, 192
SmiMI	CAYNNNNRTG	3 cut(s)	182, 1032, 1060
SmlI	CTYRAG	2 cut(s)	819, 1010
SmoI	CTYRAG	2 cut(s)	819, 1010
Sse9I	AATT	4 cut(s)	87, 363, 1021, 1068
SsiI	CCGC	4 cut(s)	96, 133, 147, 209
SspI	AATATT	1 cut(s)	783
StyD4I	CCNGG	5 cut(s)	78, 382, 423, 712, 1050
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	227, 463, 845
TaiI	ACGT	3 cut(s)	108, 267, 757
TaqI	TCGA	3 cut(s)	66, 640, 672
TasI	AATT	4 cut(s)	87, 363, 1021, 1068
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	4 cut(s)	44, 152, 546, 946
Tru1I	TTAA	4 cut(s)	450, 984, 1067, 1127
Tru9I	TTAA	4 cut(s)	450, 984, 1067, 1127
TscAI	CASTG	2 cut(s)	232, 397
TspDTI	ATGAA	3 cut(s)	200, 673, 988
TspGWI	ACGGA	3 cut(s)	145, 184, 589
TspRI	CASTG	2 cut(s)	232, 397
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	82, 192
VspI	ATTAAT	1 cut(s)	1127
XapI	RAATTY	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.