Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22154836 .. 22156779

Gene Structure 1944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATTATTATTCTTGGAATTATATTGTTATTTTTCATATTTTCTAATATTACTCCAACAAGCGCCACCAAAGCAAAAGCAACAATAAGGCACAAGAAGCCGCTAGAGTGGCTTGACGGGTCGCTTCCCTGGGACCGCGGGTTCGACCCCTTTGGGTTGGGGAAGCCCGCCGAGTACTTGCAGTTTGATTACGACGGACTCGACCAGAACCTTGCCAAAAATGTGGCGGGTGACAGCATCGGGACAAGGACTGAAACCGCGGAGGTGAATCCGACGCCGCTTCAGCCGCACACGGAGGTTTTTGCGCTGCTTAGGTTCAGGGAGTGCGAGCTAATTCACGGGAGGTGGACCATGCTGGGAGTGCTTGGTGCTCTTGCTATTGAGGGACTCACTGGTGTTGCATGGCAAAGACGCTGGAAAGGTCAATTAAGTTACATTGTTGAGTTGATCGAGGGATCGTCCTACCTAGGTCTTCCACTTCCCTTCTCCATCACCACATTGATTTGGATAGAGGTGTTGGTGATTGGCTACATTGAGTTCCAGAGAAATGCCGAGCTTGACCCGGAGAAGAGGCTGTACCCGGGTGGCAAGTTCTTTGACCCGTTGTATTTGGCCGCCGACCCGGATGAGTTTGAAAGGCTTCAACTGGCTGAGATCAAGCATGCCCATCTTGGCATGGTCGTCTTCCTCCTTTTTGGAATCCAAGCTGCTGTCACAGGAAAGGGTCCTATCAGTTTTCTGCTTACGTTTAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

253

Amino Acids

28.28

Weight (kDa)

5.59

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	36 - 236	9.9e-31	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	138, 260
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	2 cut(s)	176, 578
AgsI	TTSAA	2 cut(s)	635, 644
AjnI	CCWGG	1 cut(s)	128
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	331, 556, 707
AluI	AGCT	3 cut(s)	331, 556, 707
Alw21I	GWGCWC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	307, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	1 cut(s)	639
AspA2I	CCTAGG	1 cut(s)	466
AspLEI	GCGC	2 cut(s)	65, 307
AspS9I	GGNCC	3 cut(s)	133, 348, 725
AsuC2I	CCSGG	4 cut(s)	563, 581, 582, 623
AsuHPI	GGTGA	4 cut(s)	242, 277, 484, 532
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	3 cut(s)	133, 348, 725
AvrII	CCTAGG	1 cut(s)	466
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BbsI	GAAGAC	2 cut(s)	464, 676
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	294, 694
BccI	CCATC	2 cut(s)	497, 675
BciT130I	CCWGG	1 cut(s)	130
BcnI	CCSGG	4 cut(s)	563, 581, 582, 623
BfaI	CTAG	2 cut(s)	104, 467
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	6 cut(s)	101, 278, 287, 308, 615, 708
BlnI	CCTAGG	1 cut(s)	466
BlsI	GCNGC	6 cut(s)	102, 279, 288, 309, 616, 709
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	5 cut(s)	130, 563, 581, 582, 623
Bme18I	GGWCC	3 cut(s)	133, 348, 725
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	3 cut(s)	133, 348, 725
BmiI	GGNNCC	2 cut(s)	134, 726
BmrFI	CCNGG	5 cut(s)	130, 563, 581, 582, 623
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	464, 676
Bpu10I	CCTNAGC	1 cut(s)	311
BpuMI	CCSGG	4 cut(s)	563, 581, 582, 623
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	6 cut(s)	128, 129, 136, 258, 466, 580
Bse1I	ACTGG	2 cut(s)	397, 651
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	6 cut(s)	128, 129, 136, 258, 466, 580
BseGI	GGATG	1 cut(s)	631
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	2 cut(s)	397, 651
BseXI	GCAGC	2 cut(s)	294, 694
BseYI	CCCAGC	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	138, 260
BshFI	GGCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	3 cut(s)	563, 581, 623
BslFI	GGGAC	3 cut(s)	146, 256, 399
BsmFI	GGGAC	3 cut(s)	146, 256, 399
BsnI	GGCC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	447, 455, 654
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	643
BspFNI	CGCG	2 cut(s)	138, 260
BspLI	GGNNCC	2 cut(s)	134, 726
BspPI	GGATC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	397, 651
BssECI	CCNNGG	6 cut(s)	128, 129, 136, 258, 466, 580
BssMI	GATC	3 cut(s)	447, 455, 654
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	168, 329, 663
BstDEI	CTNAG	2 cut(s)	311, 651
BstDSI	CCRYGG	2 cut(s)	136, 258
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	2 cut(s)	138, 260
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 307
BstKTI	GATC	3 cut(s)	450, 458, 657
BstMBI	GATC	3 cut(s)	447, 455, 654
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 97, 109, 283, 286, 361
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	5 cut(s)	128, 561, 579, 580, 621
BstUI	CGCG	2 cut(s)	138, 260
BstV1I	GCAGC	2 cut(s)	294, 694
BstV2I	GAAGAC	2 cut(s)	464, 676
BstXI	CCANNNNNNTGG	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	2 cut(s)	136, 258
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	3 cut(s)	168, 329, 663
CfoI	GCGC	2 cut(s)	65, 307
Cfr13I	GGNCC	3 cut(s)	133, 348, 725
Cfr42I	CCGCGG	2 cut(s)	139, 261
Cfr9I	CCCGGG	1 cut(s)	580
CseI	GACGC	2 cut(s)	283, 420
Csp6I	GTAC	2 cut(s)	175, 577
CviAII	CATG	4 cut(s)	352, 402, 662, 676
CviQI	GTAC	2 cut(s)	175, 577
DdeI	CTNAG	2 cut(s)	311, 651
DpnI	GATC	3 cut(s)	449, 457, 656
DpnII	GATC	3 cut(s)	447, 455, 654
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	3 cut(s)	133, 348, 725
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	4 cut(s)	355, 405, 665, 679
FaiI	YATR	6 cut(s)	23, 38, 353, 403, 663, 677
FaqI	GGGAC	3 cut(s)	146, 256, 399
FatI	CATG	4 cut(s)	351, 401, 661, 675
FauI	CCCGC	3 cut(s)	131, 175, 220
Fnu4HI	GCNGC	6 cut(s)	101, 278, 287, 308, 615, 708
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	6 cut(s)	101, 278, 287, 308, 615, 708
FspBI	CTAG	2 cut(s)	104, 467
GlaI	GCGC	2 cut(s)	64, 306
GluI	GCNGC	6 cut(s)	101, 278, 287, 308, 615, 708
GsaI	CCCAGC	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	3 cut(s)	563, 581, 623
HgaI	GACGC	2 cut(s)	283, 420
HhaI	GCGC	2 cut(s)	65, 307
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	355, 405, 665, 679
Hin6I	GCGC	2 cut(s)	63, 305
HinP1I	GCGC	2 cut(s)	63, 305
HinfI	GANTC	4 cut(s)	198, 268, 387, 699
HpaII	CCGG	3 cut(s)	563, 581, 623
HphI	GGTGA	4 cut(s)	242, 277, 484, 532
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	2 cut(s)	241, 541
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	2 cut(s)	197, 277
HpyAV	CCTTC	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	2 cut(s)	181, 401
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 97, 109, 283, 286, 361
HpyF3I	CTNAG	2 cut(s)	311, 651
HpySE526I	ACGT	1 cut(s)	746
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	355, 405, 665, 679
HspAI	GCGC	2 cut(s)	63, 305
KspI	CCGCGG	2 cut(s)	139, 261
Kzo9I	GATC	3 cut(s)	447, 455, 654
Lsp1109I	GCAGC	2 cut(s)	294, 694
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	104, 467
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	3 cut(s)	230, 431, 712
MalI	GATC	3 cut(s)	449, 457, 656
MboI	GATC	3 cut(s)	447, 455, 654
MboII	GAAGA	3 cut(s)	464, 580, 676
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	3 cut(s)	18, 333, 425
MlyI	GAGTC	2 cut(s)	192, 381
MmeI	TCCRAC	2 cut(s)	80, 296
MnlI	CCTC	8 cut(s)	256, 289, 336, 376, 445, 505, 564, 698
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	2 cut(s)	428, 750
MspA1I	CMGCKG	2 cut(s)	138, 260
MspI	CCGG	3 cut(s)	563, 581, 623
MspR9I	CCNGG	5 cut(s)	130, 563, 581, 582, 623
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	2 cut(s)	138, 260
MwoI	GCNNNNNNNGC	6 cut(s)	71, 97, 109, 283, 286, 361
NciI	CCSGG	4 cut(s)	563, 581, 582, 623
NdeII	GATC	3 cut(s)	447, 455, 654
NlaIII	CATG	4 cut(s)	355, 405, 665, 679
NlaIV	GGNNCC	2 cut(s)	134, 726
NmeAIII	GCCGAG	2 cut(s)	196, 577
NmuCI	GTSAC	2 cut(s)	230, 712
NspI	RCATGY	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	665
PasI	CCCWGGG	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	268, 699
PkrI	GCNGC	6 cut(s)	102, 279, 288, 309, 616, 709
PleI	GAGTC	2 cut(s)	192, 381
PpsI	GAGTC	2 cut(s)	192, 381
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	134, 726
PspPI	GGNCC	3 cut(s)	133, 348, 725
PspPPI	RGGWCCY	1 cut(s)	725
RsaI	GTAC	2 cut(s)	176, 578
RsaNI	GTAC	2 cut(s)	175, 577
SacII	CCGCGG	2 cut(s)	139, 261
SaqAI	TTAA	2 cut(s)	428, 750
SatI	GCNGC	6 cut(s)	101, 278, 287, 308, 615, 708
Sau3AI	GATC	3 cut(s)	447, 455, 654
Sau96I	GGNCC	3 cut(s)	133, 348, 725
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	2 cut(s)	192, 381
ScrFI	CCNGG	5 cut(s)	130, 563, 581, 582, 623
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	246
Sfr303I	CCGCGG	2 cut(s)	139, 261
SgrBI	CCGCGG	2 cut(s)	139, 261
SinI	GGWCC	3 cut(s)	133, 348, 725
SmaI	CCCGGG	1 cut(s)	582
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	3 cut(s)	18, 333, 425
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	2 cut(s)	104, 467
StyD4I	CCNGG	5 cut(s)	128, 561, 579, 580, 621
StyI	CCWWGG	1 cut(s)	466
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	3 cut(s)	144, 201, 450
TasI	AATT	3 cut(s)	18, 333, 425
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	4 cut(s)	103, 280, 289, 617
TfiI	GAWTC	2 cut(s)	268, 699
Tru1I	TTAA	2 cut(s)	428, 750
Tru9I	TTAA	2 cut(s)	428, 750
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	230, 712
TseI	GCWGC	2 cut(s)	307, 707
Tsp45I	GTSAC	2 cut(s)	230, 712
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	210, 308
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	3 cut(s)	133, 348, 725
XceI	RCATGY	1 cut(s)	665
XmaI	CCCGGG	1 cut(s)	580
XmaJI	CCTAGG	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	2 cut(s)	104, 467
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.