Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22191872 .. 22193360

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAAAACAAACGACGTCGTTCTCTCTGTTTAACCCCGTGTCGTAGTTTTTTGAAGCAAAACCAGTGCGGAAAGAGCCTCCGTACACCTTCGACCTGCGGGCGACGGAACCGGAGCCGGGCCGGTCTCCGACGCGCCGAAGAGACGAAGTGGAGTGGGTCCCGCTGCAGAACCACCCGGTCTTCTCCTCCTCTCCGGTCCACGACTCGACCGCGGCTCGGGCGCCCAGAAATCTCTTGGCCTGGGACGGAGCGTCTCGGCTTTACTTCTGGGACACCGATAAGCTATGCCTTCATCGGATATCCATTCGGCGAACCAGACCCGACTTCCGTCGGCGCTGCTTCGCCTTCCAAGGTACTGCAACCGGATGTAAACCTCGACTTTGCGGTTCATAAAATATCGATCAATAGGGATGAATCAGCATTGCTCCTTTCTGGTTCGAGTGGTCTATCAGTTATGTACCCTTATGGGCGGACTTCCAACAAAGACAGTGCAACCATTTGCAGGTATTATCGGAAGATGGCAATACGTTATTATTTTTCATTTTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000056 GO:0002376 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0017038 GO:0022613 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051707 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup88

Protein Analysis

185

Amino Acids

20.63

Weight (kDa)

10.65

Isoelectric Point (pI)

70.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	19
Acc36I	ACCTGC	2 cut(s)	104, 495
AccB1I	GGYRCC	1 cut(s)	222
AccII	CGCG	2 cut(s)	135, 214
AciI	CCGC	7 cut(s)	69, 99, 163, 212, 214, 386, 472
AcyI	GRCGYC	2 cut(s)	16, 223
AfaI	GTAC	3 cut(s)	85, 357, 461
AfiI	CCNNNNNNNGG	3 cut(s)	118, 218, 504
AgsI	TTSAA	1 cut(s)	55
AhdI	GACNNNNNGTC	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw26I	GTCTC	3 cut(s)	131, 137, 260
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	120, 239
ApeKI	GCWGC	2 cut(s)	165, 338
AspLEI	GCGC	3 cut(s)	137, 225, 338
AspS9I	GGNCC	3 cut(s)	120, 159, 198
AsuC2I	CCSGG	2 cut(s)	119, 178
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	159, 198
BanI	GGYRCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	152, 325
BccI	CCATC	1 cut(s)	514
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	119, 178
BcoDI	GTCTC	3 cut(s)	131, 137, 260
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	2 cut(s)	226, 339
BfuAI	ACCTGC	2 cut(s)	104, 495
BisI	GCNGC	3 cut(s)	166, 215, 339
BlsI	GCNGC	3 cut(s)	167, 216, 340
Bme1390I	CCNGG	3 cut(s)	119, 178, 243
Bme18I	GGWCC	2 cut(s)	159, 198
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	3 cut(s)	120, 159, 198
BmiI	GGNNCC	5 cut(s)	110, 116, 160, 161, 224
BmrFI	CCNGG	3 cut(s)	119, 178, 243
BoxI	GACNNNNGTC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	119, 178
Bsa29I	ATCGAT	1 cut(s)	401
BsaHI	GRCGYC	2 cut(s)	16, 223
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	212, 242, 351
BsaWI	WCCGGW	3 cut(s)	111, 195, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 218, 504
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	212, 242, 351
BseGI	GGATG	2 cut(s)	373, 418
BseLI	CCNNNNNNNGG	3 cut(s)	118, 218, 504
BseMI	GCAATG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	177, 180
BseXI	GCAGC	2 cut(s)	152, 325
Bsh1236I	CGCG	2 cut(s)	135, 214
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	122, 241
BshNI	GGYRCC	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	6 cut(s)	112, 118, 123, 178, 196, 365
BslFI	GGGAC	3 cut(s)	145, 259, 286
BslI	CCNNNNNNNGG	3 cut(s)	118, 218, 504
BsmAI	GTCTC	3 cut(s)	131, 137, 260
BsmBI	CGTCTC	2 cut(s)	137, 260
BsmFI	GGGAC	3 cut(s)	145, 259, 286
BsnI	GGCC	2 cut(s)	122, 241
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	7 cut(s)	69, 99, 163, 212, 214, 386, 472
BspANI	GGCC	2 cut(s)	122, 241
BspDI	ATCGAT	1 cut(s)	401
BspFNI	CGCG	2 cut(s)	135, 214
BspLI	GGNNCC	5 cut(s)	110, 116, 160, 161, 224
BspMAI	CTGCAG	1 cut(s)	170
BspMI	ACCTGC	2 cut(s)	104, 495
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	212, 242, 351
BssMI	GATC	1 cut(s)	402
BssNI	GRCGYC	2 cut(s)	16, 223
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	2 cut(s)	16, 223
BstC8I	GCNNGC	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	373, 418
BstFNI	CGCG	2 cut(s)	135, 214
BstH2I	RGCGCY	2 cut(s)	226, 339
BstHHI	GCGC	3 cut(s)	137, 225, 338
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	3 cut(s)	131, 137, 260
BstMBI	GATC	1 cut(s)	402
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 220
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	3 cut(s)	117, 176, 241
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	2 cut(s)	135, 214
BstV1I	GCAGC	2 cut(s)	152, 325
BstV2I	GAAGAC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	122, 241
BsuTUI	ATCGAT	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	373, 418
BtsIMutI	CAGTG	2 cut(s)	71, 496
BveI	ACCTGC	2 cut(s)	104, 495
Cac8I	GCNNGC	1 cut(s)	101
CfoI	GCGC	3 cut(s)	137, 225, 338
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	120, 159, 198
Cfr42I	CCGCGG	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	401
CseI	GACGC	2 cut(s)	141, 242
Csp6I	GTAC	3 cut(s)	84, 356, 460
CviJI	RGCY	7 cut(s)	78, 117, 122, 217, 241, 261, 285
CviKI_1	RGCY	7 cut(s)	78, 117, 122, 217, 241, 261, 285
CviQI	GTAC	3 cut(s)	84, 356, 460
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
DriI	GACNNNNNGTC	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	159, 198
Eco88I	CYCGRG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	241
EcoRV	GATATC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	2 cut(s)	137, 260
FaiI	YATR	4 cut(s)	288, 393, 458, 468
FaqI	GGGAC	3 cut(s)	145, 259, 286
FauI	CCCGC	2 cut(s)	92, 170
Fnu4HI	GCNGC	3 cut(s)	166, 215, 339
FokI	GGATG	2 cut(s)	380, 425
Fsp4HI	GCNGC	3 cut(s)	166, 215, 339
GlaI	GCGC	3 cut(s)	136, 224, 337
GluI	GCNGC	3 cut(s)	166, 215, 339
HaeII	RGCGCY	2 cut(s)	226, 339
HaeIII	GGCC	2 cut(s)	122, 241
HapII	CCGG	6 cut(s)	112, 118, 123, 178, 196, 365
HgaI	GACGC	2 cut(s)	141, 242
HhaI	GCGC	3 cut(s)	137, 225, 338
Hin1I	GRCGYC	2 cut(s)	16, 223
Hin6I	GCGC	3 cut(s)	135, 223, 336
HinP1I	GCGC	3 cut(s)	135, 223, 336
HinfI	GANTC	2 cut(s)	205, 416
HpaII	CCGG	6 cut(s)	112, 118, 123, 178, 196, 365
Hpy166II	GTNNAC	3 cut(s)	86, 201, 373
Hpy188I	TCNGA	3 cut(s)	131, 299, 516
Hpy8I	GTNNAC	3 cut(s)	86, 201, 373
Hpy99I	CGWCG	5 cut(s)	18, 21, 108, 135, 335
HpyAV	CCTTC	3 cut(s)	99, 301, 357
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	2 cut(s)	16, 529
HpyCH4V	TGCA	5 cut(s)	4, 168, 361, 494, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 220
HpySE526I	ACGT	2 cut(s)	16, 529
Hsp92I	GRCGYC	2 cut(s)	16, 223
HspAI	GCGC	3 cut(s)	135, 223, 336
KasI	GGCGCC	1 cut(s)	222
KflI	GGGWCCC	1 cut(s)	159
KspI	CCGCGG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	402
LmnI	GCTCC	3 cut(s)	114, 250, 432
Lsp1109I	GCAGC	2 cut(s)	152, 325
MaeII	ACGT	2 cut(s)	16, 529
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	3 cut(s)	152, 174, 529
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	154, 504
MnlI	CCTC	4 cut(s)	89, 198, 201, 386
MseI	TTAA	2 cut(s)	32, 553
MspA1I	CMGCKG	2 cut(s)	165, 214
MspI	CCGG	6 cut(s)	112, 118, 123, 178, 196, 365
MspR9I	CCNGG	3 cut(s)	119, 178, 243
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	2 cut(s)	135, 214
MwoI	GCNNNNNNNGC	2 cut(s)	75, 220
NarI	GGCGCC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	119, 178
NdeII	GATC	1 cut(s)	402
NlaIV	GGNNCC	5 cut(s)	110, 116, 160, 161, 224
NmeAIII	GCCGAG	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	167, 216, 340
PleI	GAGTC	1 cut(s)	199
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	5 cut(s)	110, 116, 160, 161, 224
PspPI	GGNCC	3 cut(s)	120, 159, 198
PspPPI	RGGWCCY	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	85, 357, 461
RsaNI	GTAC	3 cut(s)	84, 356, 460
SacII	CCGCGG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	32, 553
SatI	GCNGC	3 cut(s)	166, 215, 339
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	3 cut(s)	120, 159, 198
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	3 cut(s)	119, 178, 243
SetI	ASST	8 cut(s)	19, 91, 98, 287, 357, 378, 509, 532
SfcI	CTRYAG	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	224
Sfr303I	CCGCGG	1 cut(s)	215
SgrBI	CCGCGG	1 cut(s)	215
SinI	GGWCC	2 cut(s)	159, 198
SsiI	CCGC	7 cut(s)	69, 99, 163, 212, 214, 386, 472
SspDI	GGCGCC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	117, 176, 241
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	2 cut(s)	19, 532
TaqI	TCGA	5 cut(s)	92, 208, 378, 401, 440
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	32, 553
Tru9I	TTAA	2 cut(s)	32, 553
TscAI	CASTG	2 cut(s)	71, 496
TseI	GCWGC	2 cut(s)	165, 338
TspDTI	ATGAA	5 cut(s)	283, 380, 429, 531, 537
TspGWI	ACGGA	4 cut(s)	71, 121, 263, 319
TspRI	CASTG	2 cut(s)	71, 496
VpaK11BI	GGWCC	2 cut(s)	159, 198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.