Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22243709 .. 22244746

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCCGTCAATCCCCACTCCTTTCTATGACGAAACGACCCTTCTCCTCCCTTACCACCGCCACCTTTATCATCATCACCGCCACCATCCTCTTCGTCGTTATACCACCACCAGCTCATGCCTTCGGTTCCGGCTCCACCCTTGCCGTTATCTCCGCCTCCGGCACCGTCTGCGGTGTCGTGTCAGACCAACCGCGGCAGCGCATCGTCTGCTACCGCCGCGGACAAACCGTCGCAGTCGAGCCCAACATCTCCTTCTCCACCATCTCCGCCTCCTCTGCTGGGACGACATCGCCTCACAAAACAACACCTTCCAATCCAAACGTCTTTACTTCAACAGAACCGTTACGTTGGAAAATCTCTCAGTCGGCGACGACCATATCTGCGCCAGAACTGTCGTCACAGGCACCATAAAATGCTGGCGGGTCGACGACGTGTCCGAATTGCCATCTGGGTCGGACCAATTCGCCTCGATTTCATCGGGGTCGGGTTTCTCTTGCGGAATTTCCAAAACCACCCTCCGGGTTCAATGCTGGGGCAGAGCAACTTCAATGGCGGAAGAAATACAAACCGGGTTCGGAAACATGACAATGGCGACCATCACAGCCGGCGGCTCGCACGTGTGCGGGATCAACACCACCGGGCTTATAGTCTGCCGGGGAAGCAATGGCGCCGGCCAATGGAACGTCCCTTCCGGCTCGCCTTTCGAGTTCTCTGCTCTGTCCCTCGGAGTAAACCACAGCTGCGCAATCAGAACTTCAAATCAAACTGTCATCTGTTGGGGAGGAGGAGGCCAATTTGCAATTAACCAAACAAATGGGGTGTCTTTTGAAGTAATTGCTTCTGGGTCGGATTTCGTTTGTGGATTAACCACCAGGAATTTTTCGATTGTTTGTTGGGGAGCTCGAATTGCCCGAAATTCTTCCCGGTTCTTGTGTCAATTCGTCCTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

318

Amino Acids

35.37

Weight (kDa)

9.95

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	745
AccB1I	GGYRCC	3 cut(s)	162, 404, 668
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	2 cut(s)	194, 220
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	3 cut(s)	501, 877, 916
AcvI	CACGTG	1 cut(s)	619
AcyI	GRCGYC	1 cut(s)	669
AfiI	CCNNNNNNNGG	3 cut(s)	280, 519, 678
AflIII	ACRYGT	2 cut(s)	432, 618
AgsI	TTSAA	5 cut(s)	334, 527, 549, 759, 830
AhdI	GACNNNNNGTC	2 cut(s)	228, 433
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	872
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AloI	GAACNNNNNNTCC	2 cut(s)	674, 706
AluBI	AGCT	3 cut(s)	114, 741, 902
AluI	AGCT	3 cut(s)	114, 741, 902
Alw21I	GWGCWC	1 cut(s)	904
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	2 cut(s)	673, 790
ApeKI	GCWGC	2 cut(s)	197, 741
ApoI	RAATTY	3 cut(s)	501, 877, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp700I	GAANNNNTTC	1 cut(s)	919
AspLEI	GCGC	4 cut(s)	202, 386, 671, 746
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	5 cut(s)	521, 571, 640, 656, 925
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	457
BanI	GGYRCC	3 cut(s)	162, 404, 668
BanII	GRGCYC	2 cut(s)	244, 904
BbrPI	CACGTG	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	904
BbvI	GCAGC	2 cut(s)	209, 728
BccI	CCATC	4 cut(s)	93, 270, 454, 605
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	1 cut(s)	874
BcnI	CCSGG	5 cut(s)	521, 571, 640, 656, 925
BfoI	RGCGCY	1 cut(s)	672
BisI	GCNGC	5 cut(s)	195, 198, 218, 610, 742
BlsI	GCNGC	5 cut(s)	196, 199, 219, 611, 743
Bme1390I	CCNGG	6 cut(s)	521, 571, 640, 656, 874, 925
Bme18I	GGWCC	1 cut(s)	457
BmeRI	GACNNNNNGTC	2 cut(s)	228, 433
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	5 cut(s)	128, 134, 164, 406, 670
BmrFI	CCNGG	6 cut(s)	521, 571, 640, 656, 874, 925
BmsI	GCATC	1 cut(s)	211
BpuMI	CCSGG	5 cut(s)	521, 571, 640, 656, 925
BsaAI	YACGTR	1 cut(s)	619
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	4 cut(s)	192, 218, 655, 724
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 519, 678
Bse118I	RCCGGY	2 cut(s)	605, 671
Bse3DI	GCAATG	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	874
BseDI	CCNNGG	4 cut(s)	192, 218, 655, 724
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	3 cut(s)	280, 519, 678
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	1 cut(s)	375
BseRI	GAGGAG	4 cut(s)	35, 263, 798, 801
BseXI	GCAGC	2 cut(s)	209, 728
BseYI	CCCAGC	2 cut(s)	279, 531
Bsh1236I	CGCG	2 cut(s)	194, 220
BshFI	GGCC	2 cut(s)	675, 792
BshNI	GGYRCC	3 cut(s)	162, 404, 668
BsiHKAI	GWGCWC	1 cut(s)	904
BslFI	GGGAC	3 cut(s)	296, 671, 706
BslI	CCNNNNNNNGG	3 cut(s)	280, 519, 678
BsmFI	GGGAC	3 cut(s)	296, 671, 706
BsnI	GGCC	2 cut(s)	675, 792
Bsp1286I	GDGCHC	2 cut(s)	244, 904
Bsp143I	GATC	1 cut(s)	627
BspANI	GGCC	2 cut(s)	675, 792
BspCNI	CTCAG	1 cut(s)	374
BspFNI	CGCG	2 cut(s)	194, 220
BspLI	GGNNCC	5 cut(s)	128, 134, 164, 406, 670
BspPI	GGATC	1 cut(s)	635
BspT107I	GGYRCC	3 cut(s)	162, 404, 668
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	2 cut(s)	605, 671
BssAI	RCCGGY	2 cut(s)	605, 671
BssECI	CCNNGG	4 cut(s)	192, 218, 655, 724
BssMI	GATC	1 cut(s)	627
BssNI	GRCGYC	1 cut(s)	669
Bst2UI	CCWGG	1 cut(s)	874
Bst4CI	ACNGT	5 cut(s)	167, 230, 343, 394, 769
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	669
BstAPI	GCANNNNNTGC	2 cut(s)	169, 208
BstBAI	YACGTR	1 cut(s)	619
BstC8I	GCNNGC	5 cut(s)	419, 607, 614, 673, 698
BstDEI	CTNAG	1 cut(s)	361
BstDSI	CCRYGG	2 cut(s)	192, 218
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	2 cut(s)	194, 220
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	4 cut(s)	202, 386, 671, 746
BstKTI	GATC	1 cut(s)	630
BstMBI	GATC	1 cut(s)	627
BstMWI	GCNNNNNNNGC	6 cut(s)	169, 208, 217, 276, 660, 908
BstNI	CCWGG	1 cut(s)	874
BstSCI	CCNGG	6 cut(s)	519, 569, 638, 654, 872, 923
BstUI	CGCG	2 cut(s)	194, 220
BstV1I	GCAGC	2 cut(s)	209, 728
BstXI	CCANNNNNNTGG	1 cut(s)	815
BsuRI	GGCC	2 cut(s)	675, 792
BtgI	CCRYGG	2 cut(s)	192, 218
BtgZI	GCGATG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	5 cut(s)	419, 607, 614, 673, 698
CfoI	GCGC	4 cut(s)	202, 386, 671, 746
Cfr10I	RCCGGY	2 cut(s)	605, 671
Cfr13I	GGNCC	1 cut(s)	457
Cfr42I	CCGCGG	2 cut(s)	195, 221
CviAII	CATG	2 cut(s)	117, 583
DdeI	CTNAG	1 cut(s)	361
DinI	GGCGCC	1 cut(s)	670
DpnI	GATC	1 cut(s)	629
DpnII	GATC	1 cut(s)	627
DriI	GACNNNNNGTC	2 cut(s)	228, 433
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	96
Eam1105I	GACNNNNNGTC	2 cut(s)	228, 433
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	3 cut(s)	143, 257, 569
Ecl136II	GAGCTC	1 cut(s)	902
Eco24I	GRGCYC	2 cut(s)	244, 904
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	902
Eco72I	CACGTG	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	902
EcoRII	CCWGG	1 cut(s)	872
EcoT38I	GRGCYC	2 cut(s)	244, 904
EgeI	GGCGCC	1 cut(s)	670
EheI	GGCGCC	1 cut(s)	670
FaeI	CATG	2 cut(s)	120, 586
FaiI	YATR	7 cut(s)	27, 102, 118, 378, 410, 584, 647
FaqI	GGGAC	3 cut(s)	296, 671, 706
FatI	CATG	2 cut(s)	116, 582
FauI	CCCGC	2 cut(s)	414, 617
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	5 cut(s)	195, 198, 218, 610, 742
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	2 cut(s)	244, 904
Fsp4HI	GCNGC	5 cut(s)	195, 198, 218, 610, 742
FspI	TGCGCA	1 cut(s)	745
GlaI	GCGC	4 cut(s)	201, 385, 670, 745
GluI	GCNGC	5 cut(s)	195, 198, 218, 610, 742
GsaI	CCCAGC	2 cut(s)	283, 535
HaeII	RGCGCY	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	675, 792
HhaI	GCGC	4 cut(s)	202, 386, 671, 746
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	2 cut(s)	120, 586
Hin6I	GCGC	4 cut(s)	200, 384, 669, 744
HinP1I	GCGC	4 cut(s)	200, 384, 669, 744
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	427, 733
Hpy188I	TCNGA	7 cut(s)	185, 439, 457, 578, 728, 752, 850
Hpy8I	GTNNAC	2 cut(s)	427, 733
Hpy99I	CGWCG	5 cut(s)	99, 234, 374, 431, 434
HpyAV	CCTTC	5 cut(s)	50, 131, 263, 319, 699
HpyCH4III	ACNGT	5 cut(s)	167, 230, 343, 394, 769
HpyCH4IV	ACGT	5 cut(s)	322, 347, 432, 618, 684
HpyCH4V	TGCA	1 cut(s)	800
HpyF10VI	GCNNNNNNNGC	6 cut(s)	169, 208, 217, 276, 660, 908
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	5 cut(s)	322, 347, 432, 618, 684
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	2 cut(s)	120, 586
HspAI	GCGC	4 cut(s)	200, 384, 669, 744
KasI	GGCGCC	1 cut(s)	668
KroI	GCCGGC	2 cut(s)	605, 671
KroNI	GCCGGC	2 cut(s)	607, 673
KspI	CCGCGG	2 cut(s)	195, 221
Kzo9I	GATC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	138, 899
Lsp1109I	GCAGC	2 cut(s)	209, 728
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	5 cut(s)	322, 347, 432, 618, 684
MaeIII	GTNAC	2 cut(s)	343, 397
MalI	GATC	1 cut(s)	629
MboI	GATC	1 cut(s)	627
MboII	GAAGA	3 cut(s)	83, 569, 912
MhlI	GDGCHC	2 cut(s)	244, 904
Mly113I	GGCGCC	1 cut(s)	669
MmeI	TCCRAC	3 cut(s)	330, 435, 828
MroNI	GCCGGC	2 cut(s)	605, 671
MroXI	GAANNNNTTC	1 cut(s)	919
MseI	TTAA	2 cut(s)	804, 866
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	3 cut(s)	194, 220, 741
MspR9I	CCNGG	6 cut(s)	521, 571, 640, 656, 874, 925
MvaI	CCWGG	1 cut(s)	874
MvnI	CGCG	2 cut(s)	194, 220
MwoI	GCNNNNNNNGC	6 cut(s)	169, 208, 217, 276, 660, 908
NaeI	GCCGGC	2 cut(s)	607, 673
NarI	GGCGCC	1 cut(s)	669
NciI	CCSGG	5 cut(s)	521, 571, 640, 656, 925
NdeII	GATC	1 cut(s)	627
NgoMIV	GCCGGC	2 cut(s)	605, 671
NlaIII	CATG	2 cut(s)	120, 586
NlaIV	GGNNCC	5 cut(s)	128, 134, 164, 406, 670
NmuCI	GTSAC	1 cut(s)	397
NsbI	TGCGCA	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	2 cut(s)	435, 910
PdiI	GCCGGC	2 cut(s)	607, 673
PdmI	GAANNNNTTC	1 cut(s)	919
PkrI	GCNGC	5 cut(s)	196, 199, 219, 611, 743
PluTI	GGCGCC	1 cut(s)	672
PmaCI	CACGTG	1 cut(s)	619
PmlI	CACGTG	1 cut(s)	619
Ppu21I	YACGTR	1 cut(s)	619
Psp124BI	GAGCTC	1 cut(s)	904
Psp6I	CCWGG	1 cut(s)	872
PspCI	CACGTG	1 cut(s)	619
PspFI	CCCAGC	2 cut(s)	279, 531
PspGI	CCWGG	1 cut(s)	872
PspN4I	GGNNCC	5 cut(s)	128, 134, 164, 406, 670
PspPI	GGNCC	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	741
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	904
SacII	CCGCGG	2 cut(s)	195, 221
SalI	GTCGAC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	804, 866
SatI	GCNGC	5 cut(s)	195, 198, 218, 610, 742
Sau3AI	GATC	1 cut(s)	627
Sau96I	GGNCC	1 cut(s)	457
ScrFI	CCNGG	6 cut(s)	521, 571, 640, 656, 874, 925
SduI	GDGCHC	2 cut(s)	244, 904
SfaNI	GCATC	1 cut(s)	211
SfoI	GGCGCC	1 cut(s)	670
Sfr303I	CCGCGG	2 cut(s)	195, 221
SgrBI	CCGCGG	2 cut(s)	195, 221
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	587
SspDI	GGCGCC	1 cut(s)	668
SstI	GAGCTC	1 cut(s)	904
StyD4I	CCNGG	6 cut(s)	519, 569, 638, 654, 872, 923
TaaI	ACNGT	5 cut(s)	167, 230, 343, 394, 769
TaiI	ACGT	5 cut(s)	325, 350, 435, 621, 687
TaqI	TCGA	6 cut(s)	238, 426, 470, 705, 884, 904
TauI	GCSGC	3 cut(s)	197, 220, 612
Tru1I	TTAA	2 cut(s)	804, 866
Tru9I	TTAA	2 cut(s)	804, 866
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	197, 741
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	3 cut(s)	501, 877, 916
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.