Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22356267 .. 22358337

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGGACTGGTTGTTCTATCAGACAGGAGTCTTCGAAATAAGCCAACCCCATTTAGTGGGAAAAGGCTTTGTTGTTGTCAGGATTCCGGAGACCTTGCCTTGTCTTCACGATAAAGTGATTGCAGTTGCTACAGATGTCATCGCCAGTTTATCTCTTAACCCGAAACAGGTTGGTGTCCCTGGTATTTTAGGCGGTATCATTAAAGGCTTAGAATCGGGTAAGGCGGAGCAAGACATGGACCCAGCTCCAAATCATGAGAAGTATTGTGAGAATTTGGAGAGCTTATTTTCAAGTCCGCCGTCCTTAAAACCTTCCAAAGCTGGGAAGGATGATCAAGATGTTATAGAGCTTCAAATAGGCGCAGCAGCTGCATGTACGAGATATAAGCTTGCAAAACGCCAGGAAAAACTTGAGGTACAGGTTTCTACTAATGGAGGCCTCGGATCCCGAATTAGGGTAAAGATGCATTCACATTCCATGGCACCGAGAATCCGTGCGTTGTGTAATTTTGTTTCCGATACTACACAATTCGTGATTCATCAGCTGATGAGCATGGCTTGTTTTGCACATACCAGAAGCTCAGCCAAAACTCAGAAGAACTGCGAAGCGGAGCTGAGGACTTCGCGTCAACGGCGAAGGAGCTCGCCAAGAGAATGGAAACTCGTAAATGGTGGCAAATATGATGAAAGGTACCCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

235

Amino Acids

25.93

Weight (kDa)

9.23

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	2 cut(s)	484, 693
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccII	CGCG	1 cut(s)	628
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	4 cut(s)	195, 227, 299, 611
AclWI	GGATC	2 cut(s)	441, 454
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	3 cut(s)	379, 420, 695
AfiI	CCNNNNNNNGG	5 cut(s)	58, 169, 324, 456, 457
AgsI	TTSAA	2 cut(s)	294, 356
AhdI	GACNNNNNGTC	1 cut(s)	627
AjnI	CCWGG	2 cut(s)	181, 402
AloI	GAACNNNNNNTCC	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	441, 454
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	88
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	365, 368, 371
ApoI	RAATTY	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	241
AsuII	TTCGAA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	241
BaeI	ACNNNNGTAYC	1 cut(s)	685
BamHI	GGATCC	1 cut(s)	446
BanI	GGYRCC	2 cut(s)	484, 693
BanII	GRGCYC	1 cut(s)	647
BbsI	GAAGAC	2 cut(s)	25, 98
Bbv12I	GWGCWC	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	617
BbvI	GCAGC	3 cut(s)	358, 377, 380
BceAI	ACGGC	2 cut(s)	286, 650
BciT130I	CCWGG	2 cut(s)	183, 404
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	366, 369, 372
BlpI	GCTNAGC	1 cut(s)	583
BlsI	GCNGC	3 cut(s)	367, 370, 373
Bme1390I	CCNGG	2 cut(s)	183, 404
Bme18I	GGWCC	1 cut(s)	241
BmeRI	GACNNNNNGTC	1 cut(s)	627
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	243, 448, 486, 695
BmrFI	CCNGG	2 cut(s)	183, 404
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	693
BoxI	GACNNNNGTC	1 cut(s)	29
BpiI	GAAGAC	2 cut(s)	25, 98
Bpu10I	CCTNAGC	1 cut(s)	617
Bpu1102I	GCTNAGC	1 cut(s)	583
Bpu14I	TTCGAA	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	181, 442, 480
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 169, 324, 456, 457
Bse1I	ACTGG	3 cut(s)	14, 147, 699
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	183, 404
BseDI	CCNNGG	3 cut(s)	181, 442, 480
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	5 cut(s)	58, 169, 324, 456, 457
BseMII	CTCAG	3 cut(s)	597, 608, 608
BseNI	ACTGG	3 cut(s)	14, 147, 699
BseXI	GCAGC	3 cut(s)	358, 377, 380
BseYI	CCCAGC	2 cut(s)	244, 323
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	2 cut(s)	484, 693
BsiHKAI	GWGCWC	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	5 cut(s)	58, 169, 324, 456, 457
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	334, 446
Bsp1720I	GCTNAGC	1 cut(s)	583
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	4 cut(s)	195, 227, 299, 611
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	596, 607, 609
BspEI	TCCGGA	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	628
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	4 cut(s)	243, 448, 486, 695
BspPI	GGATC	2 cut(s)	441, 454
BspT104I	TTCGAA	1 cut(s)	36
BspT107I	GGYRCC	2 cut(s)	484, 693
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	14, 147, 699
BssECI	CCNNGG	3 cut(s)	181, 442, 480
BssMI	GATC	2 cut(s)	334, 446
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	183, 404
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	393, 647
BstDEI	CTNAG	4 cut(s)	211, 583, 594, 617
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	2 cut(s)	337, 449
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	334, 446
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 566, 634
BstNI	CCWGG	2 cut(s)	183, 404
BstNSI	RCATGY	1 cut(s)	378
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	181, 402
BstSFI	CTRYAG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	3 cut(s)	358, 377, 380
BstV2I	GAAGAC	2 cut(s)	25, 98
BstX2I	RGATCY	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	393, 647
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	3 cut(s)	378, 419, 694
CviAII	CATG	5 cut(s)	238, 257, 375, 481, 556
CviQI	GTAC	3 cut(s)	378, 419, 694
DdeI	CTNAG	4 cut(s)	211, 583, 594, 617
DpnI	GATC	2 cut(s)	336, 448
DpnII	GATC	2 cut(s)	334, 446
DriI	GACNNNNNGTC	1 cut(s)	627
Eam1105I	GACNNNNNGTC	1 cut(s)	627
EciI	GGCGGA	2 cut(s)	242, 288
Ecl136II	GAGCTC	1 cut(s)	645
Eco130I	CCWWGG	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	647
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	645
EcoICRI	GAGCTC	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	181, 402
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	5 cut(s)	241, 260, 378, 484, 559
FaiI	YATR	9 cut(s)	239, 258, 347, 376, 387, 482, 557, 573, 684
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	5 cut(s)	237, 256, 374, 480, 555
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	366, 369, 372
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	366, 369, 372
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	3 cut(s)	366, 369, 372
GsaI	CCCAGC	2 cut(s)	248, 327
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	5 cut(s)	241, 260, 378, 484, 559
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	632
HindII	GTYRAC	1 cut(s)	632
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	30, 85, 215, 492, 538
HpaII	CCGG	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	7, 632
Hpy188I	TCNGA	4 cut(s)	24, 446, 520, 597
Hpy188III	TCNNGA	7 cut(s)	82, 89, 110, 257, 338, 450, 535
Hpy8I	GTNNAC	2 cut(s)	7, 632
HpyAV	CCTTC	3 cut(s)	322, 324, 633
HpyCH4V	TGCA	5 cut(s)	125, 374, 395, 469, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 566, 634
HpyF3I	CTNAG	4 cut(s)	211, 583, 594, 617
Hsp92II	CATG	5 cut(s)	241, 260, 378, 484, 559
HspAI	GCGC	1 cut(s)	363
Kpn2I	TCCGGA	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	334, 446
LmnI	GCTCC	4 cut(s)	229, 253, 613, 642
Lsp1109I	GCAGC	3 cut(s)	358, 377, 380
LweI	GCATC	1 cut(s)	456
MalI	GATC	2 cut(s)	336, 448
MboI	GATC	2 cut(s)	334, 446
MboII	GAAGA	3 cut(s)	25, 98, 610
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	4 cut(s)	274, 453, 508, 530
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	409, 431, 452, 612
Mph1103I	ATGCAT	1 cut(s)	471
MroI	TCCGGA	1 cut(s)	88
MseI	TTAA	3 cut(s)	159, 204, 308
MspA1I	CMGCKG	2 cut(s)	371, 547
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	183, 404
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	2 cut(s)	183, 404
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	3 cut(s)	371, 566, 634
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	2 cut(s)	334, 446
NlaIII	CATG	5 cut(s)	241, 260, 378, 484, 559
NlaIV	GGNNCC	4 cut(s)	243, 448, 486, 695
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	36
PagI	TCATGA	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	441
PctI	GAATGC	1 cut(s)	469
PfeI	GAWTC	4 cut(s)	85, 215, 492, 538
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	367, 370, 373
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PshAI	GACNNNNGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	647
Psp6I	CCWGG	2 cut(s)	181, 402
PspFI	CCCAGC	2 cut(s)	244, 323
PspGI	CCWGG	2 cut(s)	181, 402
PspN4I	GGNNCC	4 cut(s)	243, 448, 486, 695
PspPI	GGNCC	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	446
PvuII	CAGCTG	2 cut(s)	371, 547
RsaI	GTAC	3 cut(s)	379, 420, 695
RsaNI	GTAC	3 cut(s)	378, 419, 694
SacI	GAGCTC	1 cut(s)	647
SaqAI	TTAA	3 cut(s)	159, 204, 308
SatI	GCNGC	3 cut(s)	366, 369, 372
Sau3AI	GATC	2 cut(s)	334, 446
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	183, 404
SduI	GDGCHC	1 cut(s)	647
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	36
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	274, 453, 508, 530
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	4 cut(s)	195, 227, 299, 611
SstI	GAGCTC	1 cut(s)	647
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	181, 402
StyI	CCWWGG	1 cut(s)	480
TaqI	TCGA	1 cut(s)	36
TasI	AATT	4 cut(s)	274, 453, 508, 530
TfiI	GAWTC	4 cut(s)	85, 215, 492, 538
Tru1I	TTAA	3 cut(s)	159, 204, 308
Tru9I	TTAA	3 cut(s)	159, 204, 308
TseI	GCWGC	3 cut(s)	365, 368, 371
TspDTI	ATGAA	2 cut(s)	530, 702
TspGWI	ACGGA	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.