Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22462656 .. 22463518

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTGTTTTCTTTATGCTTTTGTTCAGTCCGTTGCAGAAGCAGCAGAGGATTTATGGGATCGGTATGTGACTTTGGGACAGACTATTCAGGCCTTTTCCAAGCACTTTTGCATATCAATTATAATGTCCTTTTTGGTGCTGCGGAGTGCGGAGGCATTGGCTGCTGCTTTGGATGAATGTCCCGATTCTATACAGGAGTCTCTTTCTACTTTATTTTCTCTGTATATCCGTGATGCTGGTTTGACTAAGGAGAATGTTGATACTGGTTGGCTGGGTCGACAAGGGGTAGCCTTGGCATTACATTCTTCTGCTGATGTACTCGGAACAAAAGACCTTCCTGTTGTTATGACATTTCTTATTTCAAGAGCACTGGCTGATCCTAATGCCGATGTTAGATTAAGATCGATCAATGCTGGTATTATGATTATTGATAAGCATGGCAGGAATAATGTTTCCTTGCTATTTCCCATCTTTGAGAACTACTTGAACAAAAAGGTAATCCTATTCTTTTCTCTGTACAAGGATGATGAACCAGCCTTGTTTTTTCCCATCAAGAAATTGTCTTATGACATTGTTTATGTTGATAGATACAATATTGACGTTAAGAGGAAAGCTAATCCTATTCTTTTCTCTGTACAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

215

Amino Acids

24.01

Weight (kDa)

5.61

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	2 cut(s)	142, 149
AclWI	GGATC	2 cut(s)	66, 371
AfaI	GTAC	3 cut(s)	318, 518, 636
AgsI	TTSAA	2 cut(s)	363, 487
AluBI	AGCT	1 cut(s)	614
AluI	AGCT	1 cut(s)	614
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	66, 371
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	4 cut(s)	41, 139, 161, 164
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	4 cut(s)	53, 126, 148, 151
BccI	CCATC	2 cut(s)	476, 557
BcoDI	GTCTC	1 cut(s)	204
BisI	GCNGC	4 cut(s)	42, 140, 162, 165
BlsI	GCNGC	4 cut(s)	43, 141, 163, 166
BmsI	GCATC	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	291
Bse1I	ACTGG	2 cut(s)	268, 375
Bse8I	GATNNNNATC	1 cut(s)	400
BseCI	ATCGAT	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	178, 529
BseJI	GATNNNNATC	1 cut(s)	400
BseNI	ACTGG	2 cut(s)	268, 375
BseXI	GCAGC	4 cut(s)	53, 126, 148, 151
BseYI	CCCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	90, 165
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	90, 165
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp1407I	TGTACA	2 cut(s)	516, 634
Bsp143I	GATC	4 cut(s)	58, 376, 401, 405
BspACI	CCGC	2 cut(s)	142, 149
BspANI	GGCC	1 cut(s)	92
BspDI	ATCGAT	1 cut(s)	404
BspPI	GGATC	2 cut(s)	66, 371
BsrGI	TGTACA	2 cut(s)	516, 634
BsrI	ACTGG	2 cut(s)	268, 375
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	4 cut(s)	58, 376, 401, 405
BssT1I	CCWWGG	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstAUI	TGTACA	2 cut(s)	516, 634
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	178, 529
BstKTI	GATC	4 cut(s)	61, 379, 404, 408
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	4 cut(s)	58, 376, 401, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 161
BstV1I	GCAGC	4 cut(s)	53, 126, 148, 151
Bsu15I	ATCGAT	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	178, 529
BtsIMutI	CAGTG	1 cut(s)	368
ClaI	ATCGAT	1 cut(s)	404
Csp6I	GTAC	3 cut(s)	317, 517, 635
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	7 cut(s)	92, 161, 271, 290, 374, 536, 614
CviKI_1	RGCY	7 cut(s)	92, 161, 271, 290, 374, 536, 614
CviQI	GTAC	3 cut(s)	317, 517, 635
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	4 cut(s)	60, 378, 403, 407
DpnII	GATC	4 cut(s)	58, 376, 401, 405
Eco130I	CCWWGG	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	1 cut(s)	440
FaqI	GGGAC	2 cut(s)	90, 165
FatI	CATG	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	42, 140, 162, 165
FokI	GGATG	2 cut(s)	185, 536
Fsp4HI	GCNGC	4 cut(s)	42, 140, 162, 165
GluI	GCNGC	4 cut(s)	42, 140, 162, 165
GsaI	CCCAGC	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HinfI	GANTC	2 cut(s)	185, 197
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	3 cut(s)	182, 363, 553
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	2 cut(s)	35, 111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 161
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	1 cut(s)	440
Kzo9I	GATC	4 cut(s)	58, 376, 401, 405
Lsp1109I	GCAGC	4 cut(s)	53, 126, 148, 151
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	60, 378, 403, 407
MboI	GATC	4 cut(s)	58, 376, 401, 405
MboII	GAAGA	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	2 cut(s)	117, 557
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	40, 145, 600
MseI	TTAA	2 cut(s)	398, 603
MwoI	GCNNNNNNNGC	2 cut(s)	41, 161
NdeII	GATC	4 cut(s)	58, 376, 401, 405
NlaIII	CATG	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	43, 141, 163, 166
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	271
RsaI	GTAC	3 cut(s)	318, 518, 636
RsaNI	GTAC	3 cut(s)	317, 517, 635
SalI	GTCGAC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	398, 603
SatI	GCNGC	4 cut(s)	42, 140, 162, 165
Sau3AI	GATC	4 cut(s)	58, 376, 401, 405
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	4 cut(s)	336, 498, 603, 616
SfaNI	GCATC	1 cut(s)	223
Sse9I	AATT	2 cut(s)	117, 557
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	142, 149
SspI	AATATT	1 cut(s)	595
StuI	AGGCCT	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	2 cut(s)	277, 404
TasI	AATT	2 cut(s)	117, 557
TatI	WGTACW	3 cut(s)	316, 516, 634
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	398, 603
Tru9I	TTAA	2 cut(s)	398, 603
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	41, 139, 161, 164
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	189, 543
TspGWI	ACGGA	2 cut(s)	19, 218
TspRI	CASTG	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.