pycom07g20840

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
22795676 .. 22798794
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGGGCTTCCTCTTACTCCTTCTGGCCATTGTGATCTTATCCTTCCTAATTGTGCAAGTTGACGTAGTGAAAAGTGATGGACTCTCAACAACTTATTATGCATCATCTTGCCCAAAGCTCTTCCCCACTGTGAAATCCATAGTCGAATCCGCAATAAAAAAAGAGGCTCGAATGGGAGCCTCTCTCCTCCACCTCTTCTTCCATGACTGTTTTGTTAATGGATGTGATGGGTCGGTGCTCCTGGATGATGCGCCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

87

Amino Acids

9.31

Weight (kDa)

5.42

Isoelectric Point (pI)

22.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 82 1.6e-12 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 24
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 240
AoxI GGCC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 253
BalI TGGCCA 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 2 cut(s) 71, 221
BciT130I CCWGG 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 110, 238
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 227, 250
BseRI GAGGAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 240
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 178
BspQI GCTCTTC 1 cut(s) 125
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 130, 209
Bst6I CTCTTC 2 cut(s) 125, 200
BstF5I GGATG 2 cut(s) 227, 250
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 227, 250
BtsIMutI CAGTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 253
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 6, 26, 118, 167, 179
CviKI_1 RGCY 5 cut(s) 6, 26, 118, 167, 179
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 125, 200
EarI CTCTTC 2 cut(s) 125, 200
EcoRII CCWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 1 cut(s) 206
FaiI YATR 5 cut(s) 99, 140, 204, 257, 259
FatI CATG 1 cut(s) 202
FokI GGATG 2 cut(s) 234, 257
GlaI GCGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 26
HhaI GCGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 2 cut(s) 81, 146
Hpy166II GTNNAC 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 29, 52
HpyCH4III ACNGT 2 cut(s) 130, 209
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 55, 101
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 176, 243
LpnPI CCDG 3 cut(s) 8, 227, 254
LweI GCATC 2 cut(s) 110, 238
MaeII ACGT 1 cut(s) 63
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 3 cut(s) 112, 187, 190
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 5 cut(s) 20, 157, 190, 197, 203
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 103
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
NdeII GATC 1 cut(s) 33
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 240
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 178
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 240
SetI ASST 3 cut(s) 66, 120, 195
SfaNI GCATC 2 cut(s) 110, 238
SgeI CNNG 7 cut(s) 35, 68, 120, 180, 215, 253, 254
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 130, 209
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 144, 169
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.