pycom07g20990

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
22893236 .. 22893627
392 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGGTTATATTTTGCTTCATCGATCCATTTGACTGGAGGAACATCCTTGGAATTTTCGTCGCACTTGCTGGGATGGTTTTATATTCATACTTTTGCACTCGTGAGGGTCAGAAAAAGGTTGCTGAAGAAGCAACGCAGCCATCACAGGCAGGGGAAGGTGAGTCGGATCCTCTAGTGGCCGTGGAAACCGGAAGCGGGGTAGGAACTGATTCCGCTCCCCAAATTGGCCCTGTATGGAAGTCGAACAAAGATTTGCATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

88

Amino Acids

9.39

Weight (kDa)

4.53

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 215
AciI CCGC 2 cut(s) 195, 213
AclWI GGATC 3 cut(s) 17, 161, 174
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 195, 224
AlwI GGATC 3 cut(s) 17, 161, 174
AoxI GGCC 2 cut(s) 177, 226
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 170
BamHI GGATCC 1 cut(s) 166
BauI CACGAG 1 cut(s) 99
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 67, 148
BceAI ACGGC 1 cut(s) 164
BfaI CTAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 46, 180
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 224
Bse1I ACTGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 46, 180
BseGI GGATG 2 cut(s) 42, 78
BseLI CCNNNNNNNGG 2 cut(s) 195, 224
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 148
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 2 cut(s) 179, 228
BshVI ATCGAT 1 cut(s) 21
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 195, 224
BsnI GGCC 2 cut(s) 179, 228
Bsp143I GATC 2 cut(s) 22, 166
BspACI CCGC 2 cut(s) 195, 213
BspANI GGCC 2 cut(s) 179, 228
BspDI ATCGAT 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 3 cut(s) 17, 161, 174
BsrBI CCGCTC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 46, 180
BssMI GATC 2 cut(s) 22, 166
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 42, 78
BstKTI GATC 2 cut(s) 25, 169
BstMBI GATC 2 cut(s) 22, 166
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 2 cut(s) 179, 228
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 42, 78
Cac8I GCNNGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 21
CviAII CATG 1 cut(s) 257
CviJI RGCY 3 cut(s) 139, 179, 228
CviKI_1 RGCY 3 cut(s) 139, 179, 228
DpnI GATC 2 cut(s) 24, 168
DpnII GATC 2 cut(s) 22, 166
EaeI YGGCCR 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 260
FaiI YATR 5 cut(s) 8, 82, 88, 235, 258
FatI CATG 1 cut(s) 256
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 29, 85
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 173
GluI GCNGC 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 2 cut(s) 179, 228
HapII CCGG 1 cut(s) 189
Hin1II CATG 1 cut(s) 260
HinfI GANTC 2 cut(s) 161, 209
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 111, 166
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 96, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 260
Kzo9I GATC 2 cut(s) 22, 166
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 19, 54, 131, 135, 202, 243
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 1 cut(s) 173
MalI GATC 2 cut(s) 24, 168
MbiI CCGCTC 1 cut(s) 215
MboI GATC 2 cut(s) 22, 166
MboII GAAGA 1 cut(s) 137
MflI RGATCY 1 cut(s) 166
MluCI AATT 2 cut(s) 51, 222
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 3 cut(s) 30, 97, 180
MroXI GAANNNNTTC 1 cut(s) 208
MspI CCGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 2 cut(s) 22, 166
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 168
NspI RCATGY 1 cut(s) 260
PaeI GCATGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 166
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 22, 166
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 170
SetI ASST 2 cut(s) 120, 160
SphI GCATGC 1 cut(s) 260
Sse9I AATT 2 cut(s) 51, 222
SsiI CCGC 2 cut(s) 195, 213
SspMI CTAG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 2 cut(s) 21, 242
TasI AATT 2 cut(s) 51, 222
TfiI GAWTC 1 cut(s) 209
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 7, 75
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.