Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22912798 .. 22913928

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACTTACAAGGAGTACCGTGCTCATTTTAGCATCTGGGCTTTGATGAAGGCCCCTCTTTTGATTGGTTGTGATGTAAGAAACATGACTGCAGAAACATTTGAGATTCTAAGCAATGAGGAGGTTATTGCTGTAAACCAAGATCCACTTGGGGTTCAGGGAAGGAAAGTTGATGTTTCTGGAACAGATGGTTGCTATCAGGTTTGGGCAGGTCCTCTATCAGGAGATAGGTTGACCGTTGCTCTCTGGAATCGGTGCTCGAAAGCAGAGACTATAACAGCTACTTGGGAAGTACTTGGACTTGAATCCGGCATCAGTGTCTCAGTGAGAGATTTGTGGCAGCACGAAGAGGTAGCGGTAGACGCGGTATCGTCATTTGGTGCTCGGGTCGATGCTCACGACTGCCGGATGTACATTTTTACTCCTCGGACCGCCTCGCTCAGATATGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

152

Amino Acids

16.8

Weight (kDa)

5.14

Isoelectric Point (pI)

17.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	6 - 48	5.1e-08	Alpha galactosidase A
Melibiase_C	PF17801	63 - 139	9.2e-20	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	365
AciI	CCGC	3 cut(s)	356, 365, 432
AclWI	GGATC	1 cut(s)	137
AfaI	GTAC	3 cut(s)	17, 294, 413
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	2 cut(s)	281, 452
AluI	AGCT	2 cut(s)	281, 452
Alw21I	GWGCWC	3 cut(s)	25, 260, 385
Alw26I	GTCTC	2 cut(s)	263, 325
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	52, 212, 429
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	2 cut(s)	212, 429
Bbv12I	GWGCWC	3 cut(s)	25, 260, 385
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	263, 325
BfmI	CTRYAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	294
Bme18I	GGWCC	2 cut(s)	212, 429
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	3 cut(s)	52, 212, 429
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	3 cut(s)	42, 321, 382
BsaJI	CCNNGG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	336, 454
BseRI	GAGGAG	2 cut(s)	134, 414
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	3 cut(s)	25, 260, 385
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	309, 406
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	263, 325
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	25, 260, 385
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	3 cut(s)	356, 365, 432
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	335, 453
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	94
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	20, 238
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	411
BstDEI	CTNAG	4 cut(s)	110, 322, 440, 453
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	263, 325
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	322, 330
BveI	ACCTGC	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	52, 212, 429
CpoI	CGGWCCG	1 cut(s)	429
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	16, 293, 412
CspI	CGGWCCG	1 cut(s)	429
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	4 cut(s)	41, 53, 281, 452
CviKI_1	RGCY	4 cut(s)	41, 53, 281, 452
CviQI	GTAC	3 cut(s)	16, 293, 412
DdeI	CTNAG	4 cut(s)	110, 322, 440, 453
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco47I	GGWCC	2 cut(s)	212, 429
Eco88I	CYCGRG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	52, 212
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 275, 447
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	309, 406
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	3 cut(s)	106, 250, 305
HpaII	CCGG	2 cut(s)	309, 406
Hpy166II	GTNNAC	3 cut(s)	136, 234, 361
Hpy188I	TCNGA	2 cut(s)	429, 443
Hpy188III	TCNNGA	4 cut(s)	180, 222, 247, 398
Hpy8I	GTNNAC	3 cut(s)	136, 234, 361
HpyAV	CCTTC	2 cut(s)	43, 156
HpyCH4III	ACNGT	2 cut(s)	20, 238
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	4 cut(s)	110, 322, 440, 453
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	9 cut(s)	22, 143, 165, 185, 195, 207, 232, 322, 419
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	3 cut(s)	42, 321, 382
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	359
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	3 cut(s)	25, 260, 385
MnlI	CCTC	7 cut(s)	66, 112, 115, 225, 343, 435, 445
MspI	CCGG	2 cut(s)	309, 406
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	106, 250, 305
PkrI	GCNGC	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	3 cut(s)	52, 212, 429
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	3 cut(s)	17, 294, 413
RsaNI	GTAC	3 cut(s)	16, 293, 412
Rsr2I	CGGWCCG	1 cut(s)	429
RsrII	CGGWCCG	1 cut(s)	429
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	3 cut(s)	52, 212, 429
ScaI	AGTACT	1 cut(s)	294
SduI	GDGCHC	3 cut(s)	25, 260, 385
SetI	ASST	7 cut(s)	126, 204, 214, 233, 283, 354, 454
SfaNI	GCATC	3 cut(s)	42, 321, 382
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	2 cut(s)	212, 429
SsiI	CCGC	3 cut(s)	356, 365, 432
TaaI	ACNGT	2 cut(s)	20, 238
TaqI	TCGA	2 cut(s)	260, 390
TatI	WGTACW	2 cut(s)	292, 411
TfiI	GAWTC	3 cut(s)	106, 250, 305
TscAI	CASTG	2 cut(s)	322, 330
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	322, 330
VpaK11BI	GGWCC	2 cut(s)	212, 429
XagI	CCTNNNNNAGG	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.