Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22941402 .. 22942371

Gene Structure 970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCATATTTTCATTCAATCTTTGCAATGGCCGGTAACTTTCCACTGCTTTGTCTCGTCTTCTTCGTGGCGCTTTCGACAGCATTCGGTTCTCCAATTGGAGGAAGTAATTTCCGTGTACAAATCCAACAAAATCTAAAGAATGAGACTACGTATGATCCTAACCAGGAAGCGCTCCAGGCCCTTCTTAATTCTGACGTTGAAGTCCTAGTCGGAGTTGGTAATGAGGAACTTCAACAACTTGCAAGTACTGAATCCGCTGCTGAGGACTGGGTAGAAACTTACATTAGGCCTTATTCACCGCAAATCAATTTTCGATACATAGCCGTAGGCAACGAGGTCGTCCCGGAAGAGGTTGCAAAATACGTCCTCCCAGCAATGCCAAACTTGCACAATCCAATGTATACCCTTACTTTACCTACATTGAGAAACCCTAGCGACGTTTCACTGCCTTATGCATTGTTCGCTTCAGAAAGCGTTGTTGTTACGGATGATGGTCTGAGTTATGACAACCTGTTTGATGCCATGGTGGATCGTTTTACATCCTTGCAGGAAGCAGGGGCACCCCAAGTTCGAGTGGTGGTGTCCGAGAGGGGCTGCCCCTCCGACGGGAATGGGAACGTGACAACGCCAAGCATTGCGCAAAAATACAACTCTAACCTAATGAGGCACGTGCTGTCGTCACATGGCACTCCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002376 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008422 GO:0008810 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009814 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

235

Amino Acids

25.69

Weight (kDa)

4.59

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	45 - 134	2.3e-20	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	147 - 233	1.7e-15	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc16I	TGCGCA	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	2 cut(s)	258, 302
AclWI	GGATC	2 cut(s)	152, 540
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	453
AcvI	CACGTG	1 cut(s)	673
AfaI	GTAC	2 cut(s)	120, 250
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	101, 352, 608, 609
AgsI	TTSAA	3 cut(s)	18, 203, 236
AjnI	CCWGG	2 cut(s)	165, 177
Alw26I	GTCTC	2 cut(s)	59, 140
AlwI	GGATC	2 cut(s)	152, 540
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	3 cut(s)	30, 180, 290
ApeKI	GCWGC	2 cut(s)	260, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspLEI	GCGC	3 cut(s)	73, 175, 643
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	562
BbrPI	CACGTG	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	247, 584
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	2 cut(s)	167, 179
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	59, 140
BfaI	CTAG	2 cut(s)	209, 435
BfoI	RGCGCY	2 cut(s)	74, 176
BisI	GCNGC	2 cut(s)	261, 598
BlsI	GCNGC	2 cut(s)	262, 599
BmcAI	AGTACT	1 cut(s)	250
Bme1390I	CCNGG	3 cut(s)	167, 179, 347
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	3 cut(s)	167, 179, 347
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	347
BsaAI	YACGTR	2 cut(s)	153, 673
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 352, 608, 609
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	3 cut(s)	33, 384, 636
BseBI	CCWGG	2 cut(s)	167, 179
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	496, 542
BseLI	CCNNNNNNNGG	4 cut(s)	101, 352, 608, 609
BseMI	GCAATG	3 cut(s)	33, 384, 636
BseMII	CTCAG	2 cut(s)	255, 491
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	247, 584
BseYI	CCCAGC	1 cut(s)	373
BshFI	GGCC	3 cut(s)	32, 182, 292
BshNI	GGYRCC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	33, 347
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	4 cut(s)	101, 352, 608, 609
BsmAI	GTCTC	2 cut(s)	59, 140
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	32, 182, 292
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	157, 532
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	2 cut(s)	258, 302
BspANI	GGCC	3 cut(s)	32, 182, 292
BspCNI	CTCAG	2 cut(s)	256, 492
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	2 cut(s)	152, 540
BspT107I	GGYRCC	1 cut(s)	562
BsrDI	GCAATG	3 cut(s)	33, 384, 636
BsrFI	RCCGGY	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	2 cut(s)	157, 532
BssNAI	GTATAC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	525
Bst1107I	GTATAC	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	167, 179
Bst6I	CTCTTC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	118
BstBAI	YACGTR	2 cut(s)	153, 673
BstDEI	CTNAG	2 cut(s)	264, 500
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	496, 542
BstH2I	RGCGCY	2 cut(s)	74, 176
BstHHI	GCGC	3 cut(s)	73, 175, 643
BstKTI	GATC	2 cut(s)	160, 535
BstMAI	GTCTC	2 cut(s)	59, 140
BstMBI	GATC	2 cut(s)	157, 532
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 388, 464
BstNI	CCWGG	2 cut(s)	167, 179
BstSCI	CCNGG	3 cut(s)	165, 177, 345
BstSLI	GKGCMC	1 cut(s)	565
BstSNI	TACGTA	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	247, 584
BstV2I	GAAGAC	1 cut(s)	52
BstZ17I	GTATAC	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	32, 182, 292
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	496, 542
BtsI	GCAGTG	2 cut(s)	44, 446
BtsIMutI	CAGTG	2 cut(s)	44, 446
CfoI	GCGC	3 cut(s)	73, 175, 643
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	119, 249
CviAII	CATG	3 cut(s)	526, 686, 702
CviJI	RGCY	5 cut(s)	32, 182, 292, 326, 597
CviKI_1	RGCY	5 cut(s)	32, 182, 292, 326, 597
CviQI	GTAC	2 cut(s)	119, 249
DdeI	CTNAG	2 cut(s)	264, 500
DpnI	GATC	2 cut(s)	159, 534
DpnII	GATC	2 cut(s)	157, 532
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco105I	TACGTA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	292
Eco47III	AGCGCT	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	453
Eco72I	CACGTG	1 cut(s)	673
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	165, 177
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	3 cut(s)	529, 689, 705
FaiI	YATR	9 cut(s)	7, 156, 323, 405, 456, 507, 527, 687, 703
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	525, 685, 701
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	2 cut(s)	261, 598
FokI	GGATG	2 cut(s)	503, 529
Fsp4HI	GCNGC	2 cut(s)	261, 598
FspBI	CTAG	2 cut(s)	209, 435
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	3 cut(s)	72, 174, 642
GluI	GCNGC	2 cut(s)	261, 598
GsaI	CCCAGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	2 cut(s)	74, 176
HaeIII	GGCC	3 cut(s)	32, 182, 292
HapII	CCGG	2 cut(s)	33, 347
HhaI	GCGC	3 cut(s)	73, 175, 643
Hin1II	CATG	3 cut(s)	529, 689, 705
Hin6I	GCGC	3 cut(s)	71, 173, 641
HinP1I	GCGC	3 cut(s)	71, 173, 641
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	33, 347
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	119, 405
Hpy188I	TCNGA	6 cut(s)	196, 215, 472, 501, 589, 607
Hpy8I	GTNNAC	2 cut(s)	119, 405
Hpy99I	CGWCG	2 cut(s)	443, 611
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	6 cut(s)	152, 198, 366, 441, 621, 672
HpyCH4V	TGCA	6 cut(s)	26, 245, 359, 391, 458, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 388, 464
HpyF3I	CTNAG	2 cut(s)	264, 500
HpySE526I	ACGT	6 cut(s)	152, 198, 366, 441, 621, 672
Hsp92II	CATG	3 cut(s)	529, 689, 705
HspAI	GCGC	3 cut(s)	71, 173, 641
Kzo9I	GATC	2 cut(s)	157, 532
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	2 cut(s)	247, 584
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	209, 435
MaeII	ACGT	6 cut(s)	152, 198, 366, 441, 621, 672
MaeIII	GTNAC	4 cut(s)	35, 484, 622, 681
MalI	GATC	2 cut(s)	159, 534
MboI	GATC	2 cut(s)	157, 532
MboII	GAAGA	3 cut(s)	52, 55, 362
MfeI	CAATTG	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	4 cut(s)	96, 109, 190, 310
MmeI	TCCRAC	3 cut(s)	151, 193, 630
MnlI	CCTC	9 cut(s)	95, 220, 259, 331, 346, 380, 585, 613, 660
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	33, 347
MspR9I	CCNGG	3 cut(s)	167, 179, 347
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	167, 179
MwoI	GCNNNNNNNGC	3 cut(s)	179, 388, 464
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	2 cut(s)	157, 532
NlaIII	CATG	3 cut(s)	529, 689, 705
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	622, 681
NsbI	TGCGCA	1 cut(s)	642
NsiI	ATGCAT	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	262, 599
PmaCI	CACGTG	1 cut(s)	673
PmlI	CACGTG	1 cut(s)	673
Ppu21I	YACGTR	2 cut(s)	153, 673
Psp6I	CCWGG	2 cut(s)	165, 177
PspCI	CACGTG	1 cut(s)	673
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	165, 177
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	2 cut(s)	120, 250
RsaNI	GTAC	2 cut(s)	119, 249
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	261, 598
Sau3AI	GATC	2 cut(s)	157, 532
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	250
ScrFI	CCNGG	3 cut(s)	167, 179, 347
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	511
SnaBI	TACGTA	1 cut(s)	153
Sse9I	AATT	4 cut(s)	96, 109, 190, 310
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	258, 302
SspMI	CTAG	2 cut(s)	209, 435
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	165, 177, 345
StyI	CCWWGG	1 cut(s)	525
TaiI	ACGT	6 cut(s)	155, 201, 369, 444, 624, 675
TaqI	TCGA	3 cut(s)	77, 316, 574
TasI	AATT	4 cut(s)	96, 109, 190, 310
TatI	WGTACW	2 cut(s)	118, 248
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	51, 453
TseFI	GTSAC	2 cut(s)	622, 681
TseI	GCWGC	2 cut(s)	260, 597
Tsp45I	GTSAC	2 cut(s)	622, 681
TspGWI	ACGGA	2 cut(s)	104, 503
TspRI	CASTG	2 cut(s)	51, 453
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	2 cut(s)	209, 435
ZrmI	AGTACT	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.