Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23136689 .. 23138187

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTTGTGGTTCTTGAGCACAAAATATATGGTTACAACTTTACGGATCTGAAGCTGCTGCATCAGATTGAGACTGTAGCAAATCCTAGGGGATTGTGCAGCCTTTCACACCATCCAAATACATCTGTGCTGGCTTGCCCAGGCCTTCAACGAGGACAAGTTCGAATTGAACATTTTGGGCTGAACTTGACGAAGTTAATCAATGCTCATGATTCTCATATTGCATGCTTGACCTTAACAATGGACGGGCTGCTTCTTGCAACTGCTAGTATTAAGGGTACTTTGATAAGAATCTTCAACACAATGGATGGGACTCGCTTGCAAGAGGTACGCAGAGGAGTGGACAGAGCAGAAATTTACAGTATTGCTCTTTCTCCAAATGTTCAGTGGTTGGCAGCATCGAGTGATAAGGGCACTGTGCATATATTCAGCCTCAGAGTTAGAGTATTCGGGGAGGTTCTTTCTGCTCATAATTCTGCTCAAGGGGCAGCAATGTTTCAGCAGAACTCTTCAAATTCCCTGGATCCTCTTATTTCTCCAAGCACTGGTGCCAATTCTAGTTCATCATTGTCTTTCATGGGAGGGGTTTTACCTAAATATTTTAGCTCAGAACGGTCATTTGCTCGGTTCCACTTGCCAGAAGACACTCAATTCATTACTGCATTTGGTTCTCAAAACACTGTCATCATTGTTGGCATGGATGGGAGTTTCTACAAATGCAGTTTTGATCCAGTGAATGGAGGTGAGATGGTGCAGCAGGAATATGTACGCTTTCTGAAAACCGAAAGCAGGCGGCCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

268

Amino Acids

29.35

Weight (kDa)

8.37

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	2 - 146	4.8e-26	PROPPIN
WD40_CDC20-Fz	PF24807	2 - 174	3.5e-08	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	26 - 146	2.3e-07	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	30 - 159	2.3e-06	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	34 - 148	9.3e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	67 - 170	5.8e-09	WDR5 beta-propeller domain
WD40_Prp19	PF24814	69 - 161	6.1e-08	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	70 - 147	8.7e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccB7I	CCANNNNNTGG	2 cut(s)	545, 737
AciI	CCGC	1 cut(s)	793
AclWI	GGATC	4 cut(s)	54, 518, 531, 722
AcoI	YGGCCR	1 cut(s)	794
AcsI	RAATTY	2 cut(s)	354, 514
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	3 cut(s)	280, 330, 768
AfiI	CCNNNNNNNGG	3 cut(s)	545, 737, 789
AgsI	TTSAA	4 cut(s)	149, 170, 298, 513
AjnI	CCWGG	2 cut(s)	139, 519
AluBI	AGCT	2 cut(s)	55, 606
AluI	AGCT	2 cut(s)	55, 606
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	4 cut(s)	54, 518, 531, 722
AoxI	GGCC	2 cut(s)	142, 794
ApeKI	GCWGC	7 cut(s)	55, 58, 99, 250, 395, 488, 754
ApoI	RAATTY	2 cut(s)	354, 514
AspA2I	CCTAGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	755
AsuII	TTCGAA	1 cut(s)	163
AvrII	CCTAGG	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	7 cut(s)	42, 45, 111, 237, 407, 500, 766
BccI	CCATC	4 cut(s)	120, 302, 695, 742
BciT130I	CCWGG	2 cut(s)	141, 521
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	3 cut(s)	87, 267, 558
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	8 cut(s)	56, 59, 100, 251, 396, 489, 755, 794
BlnI	CCTAGG	1 cut(s)	86
BlsI	GCNGC	8 cut(s)	57, 60, 101, 252, 397, 490, 756, 795
Bme1390I	CCNGG	2 cut(s)	141, 521
BmiI	GGNNCC	3 cut(s)	525, 550, 629
BmrFI	CCNGG	2 cut(s)	141, 521
BmsI	GCATC	2 cut(s)	70, 407
BpiI	GAAGAC	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	35, 465
BsaBI	GATNNNNATC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	86, 139, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	545, 737, 789
Bse1I	ACTGG	2 cut(s)	550, 731
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	141, 521
BseDI	CCNNGG	3 cut(s)	86, 139, 519
BseGI	GGATG	3 cut(s)	112, 313, 706
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	3 cut(s)	545, 737, 789
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	2 cut(s)	448, 621
BseNI	ACTGG	2 cut(s)	550, 731
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	7 cut(s)	42, 45, 111, 237, 407, 500, 766
BsgI	GTGCAG	2 cut(s)	118, 773
BshFI	GGCC	2 cut(s)	144, 796
BshNI	GGYRCC	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	3 cut(s)	545, 737, 789
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	144, 796
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	21, 416
Bsp143I	GATC	3 cut(s)	46, 523, 727
BspACI	CCGC	1 cut(s)	793
BspANI	GGCC	2 cut(s)	144, 796
BspCNI	CTCAG	2 cut(s)	447, 620
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	525, 550, 629
BspPI	GGATC	4 cut(s)	54, 518, 531, 722
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	550, 731
BssECI	CCNNGG	3 cut(s)	86, 139, 519
BssMI	GATC	3 cut(s)	46, 523, 727
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	141, 521
Bst4CI	ACNGT	5 cut(s)	76, 362, 418, 615, 682
Bst6I	CTCTTC	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	5 cut(s)	132, 136, 226, 320, 791
BstDEI	CTNAG	2 cut(s)	434, 607
BstF5I	GGATG	3 cut(s)	112, 313, 706
BstKTI	GATC	3 cut(s)	49, 526, 730
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	46, 523, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	141, 521
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	139, 519
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	7 cut(s)	42, 45, 111, 237, 407, 500, 766
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	2 cut(s)	46, 523
BstYI	RGATCY	2 cut(s)	46, 523
BsuRI	GGCC	2 cut(s)	144, 796
BtsCI	GGATG	3 cut(s)	112, 313, 706
BtsIMutI	CAGTG	5 cut(s)	392, 414, 543, 678, 738
Cac8I	GCNNGC	5 cut(s)	132, 136, 226, 320, 791
CciI	TCATGA	1 cut(s)	208
Csp6I	GTAC	3 cut(s)	279, 329, 767
CviAII	CATG	4 cut(s)	209, 225, 577, 697
CviJI	RGCY	9 cut(s)	55, 102, 134, 144, 181, 250, 432, 606, 796
CviKI_1	RGCY	9 cut(s)	55, 102, 134, 144, 181, 250, 432, 606, 796
CviQI	GTAC	3 cut(s)	279, 329, 767
DdeI	CTNAG	2 cut(s)	434, 607
DpnI	GATC	3 cut(s)	48, 525, 729
DpnII	GATC	3 cut(s)	46, 523, 727
EaeI	YGGCCR	1 cut(s)	794
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	86
Eco147I	AGGCCT	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	139, 519
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	4 cut(s)	212, 228, 580, 700
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	4 cut(s)	208, 224, 576, 696
Fnu4HI	GCNGC	8 cut(s)	56, 59, 100, 251, 396, 489, 755, 794
FokI	GGATG	3 cut(s)	99, 320, 713
Fsp4HI	GCNGC	8 cut(s)	56, 59, 100, 251, 396, 489, 755, 794
FspBI	CTAG	3 cut(s)	87, 267, 558
GluI	GCNGC	8 cut(s)	56, 59, 100, 251, 396, 489, 755, 794
HaeIII	GGCC	2 cut(s)	144, 796
Hin1II	CATG	4 cut(s)	212, 228, 580, 700
HinfI	GANTC	3 cut(s)	212, 291, 313
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	5 cut(s)	51, 66, 437, 610, 777
Hpy188III	TCNNGA	2 cut(s)	14, 209
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	5 cut(s)	76, 362, 418, 615, 682
HpyCH4V	TGCA	9 cut(s)	61, 99, 224, 260, 322, 421, 662, 720, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	434, 607
Hsp92II	CATG	4 cut(s)	212, 228, 580, 700
Kzo9I	GATC	3 cut(s)	46, 523, 727
Lsp1109I	GCAGC	7 cut(s)	42, 45, 111, 237, 407, 500, 766
LweI	GCATC	2 cut(s)	70, 407
MaeI	CTAG	3 cut(s)	87, 267, 558
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	48, 525, 729
MboI	GATC	3 cut(s)	46, 523, 727
MboII	GAAGA	3 cut(s)	286, 501, 653
MflI	RGATCY	2 cut(s)	46, 523
MhlI	GDGCHC	2 cut(s)	21, 416
MluCI	AATT	6 cut(s)	165, 354, 472, 514, 553, 650
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	146, 319, 329, 443, 448, 537, 575, 734
MseI	TTAA	3 cut(s)	197, 236, 273
MspR9I	CCNGG	2 cut(s)	141, 521
MvaI	CCWGG	2 cut(s)	141, 521
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeII	GATC	3 cut(s)	46, 523, 727
NlaIII	CATG	4 cut(s)	212, 228, 580, 700
NlaIV	GGNNCC	3 cut(s)	525, 550, 629
NspI	RCATGY	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	228
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	212, 291
PflMI	CCANNNNNTGG	2 cut(s)	545, 737
PkrI	GCNGC	8 cut(s)	57, 60, 101, 252, 397, 490, 756, 795
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	139, 519
PspGI	CCWGG	2 cut(s)	139, 519
PspN4I	GGNNCC	3 cut(s)	525, 550, 629
PsuI	RGATCY	2 cut(s)	46, 523
RsaI	GTAC	3 cut(s)	280, 330, 768
RsaNI	GTAC	3 cut(s)	279, 329, 767
SaqAI	TTAA	3 cut(s)	197, 236, 273
SatI	GCNGC	8 cut(s)	56, 59, 100, 251, 396, 489, 755, 794
Sau3AI	GATC	3 cut(s)	46, 523, 727
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	141, 521
SduI	GDGCHC	2 cut(s)	21, 416
SetI	ASST	7 cut(s)	57, 236, 330, 459, 595, 608, 745
SfaNI	GCATC	2 cut(s)	70, 407
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	14, 480
SmoI	CTYRAG	2 cut(s)	14, 480
SphI	GCATGC	1 cut(s)	228
Sse9I	AATT	6 cut(s)	165, 354, 472, 514, 553, 650
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	793
SspI	AATATT	1 cut(s)	599
SspMI	CTAG	3 cut(s)	87, 267, 558
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	139, 519
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	5 cut(s)	76, 362, 418, 615, 682
TaqI	TCGA	2 cut(s)	163, 401
TasI	AATT	6 cut(s)	165, 354, 472, 514, 553, 650
TauI	GCSGC	1 cut(s)	796
TfiI	GAWTC	2 cut(s)	212, 291
Tru1I	TTAA	3 cut(s)	197, 236, 273
Tru9I	TTAA	3 cut(s)	197, 236, 273
TscAI	CASTG	5 cut(s)	392, 421, 550, 685, 738
TseI	GCWGC	7 cut(s)	55, 58, 99, 250, 395, 488, 754
TspDTI	ATGAA	3 cut(s)	552, 565, 643
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	5 cut(s)	392, 421, 550, 685, 738
Van91I	CCANNNNNTGG	2 cut(s)	545, 737
XapI	RAATTY	2 cut(s)	354, 514
XceI	RCATGY	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	86
XspI	CTAG	3 cut(s)	87, 267, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.