Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23279574 .. 23280184

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGAATGGGGTAGAGAGAGAAAATGGGTTGGTGCTATTTAGCGACGATGAGCTGAGAGAGATGAGCGGGGTGAATAAAGGGTCGGACCATATAGAGGTCACGTGCGGCTGCACCAGCCACATATACGGTGATGCAGTCGGGAGGTTTAGGGTTTTCGTCAATGGTGACCTGGAAGTCACTTGCGAGTGCACCCCTGGCTGTCAAGAAGGGTTTTTATTTTTAATGCATGTTGTTTGCGTTTTGAGCTTCTTTGAGTTCATCGTGGACTGGGTTTTGACGTTGATGGCTGCAGTCTGTCAGTCCCTTTCCGATTTGCCTAATCTATTGGGTTTGTATTTGATGACGACGAGCGTTTGCTTTTGCTTTTGCAAGCTGTTCACTGTATTTTTGTTGGGCATACAGTTGAGGTGTATGCTGTTTTGTCTCACTAAATGCCTTCTCCTTGCTGAGTGTACAGTAGTTATATGTTTGCCTACTCTTCATATGGTGGAGTCCAGATGGTTTCTGGCTTGTTTGTGGAGTAAAGAGCTTTTCTTTAAGTTGGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAND

Protein Analysis

185

Amino Acids

20.75

Weight (kDa)

4.87

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	22 - 75	2.2e-19	ULTRAPETALA1 SAND domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	69
AciI	CCGC	2 cut(s)	69, 108
AcvI	CACGTG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	171, 196
AluBI	AGCT	4 cut(s)	55, 249, 376, 532
AluI	AGCT	4 cut(s)	55, 249, 376, 532
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	431
Alw44I	GTGCAC	1 cut(s)	190
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	111, 290
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	85, 143, 179
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	194
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	98, 277
BccI	CCATC	2 cut(s)	280, 495
BciT130I	CCWGG	2 cut(s)	173, 198
BcoDI	GTCTC	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	3 cut(s)	109, 112, 291
BlsI	GCNGC	3 cut(s)	110, 113, 292
Bme1390I	CCNGG	2 cut(s)	173, 198
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	173, 198
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	173, 198
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	47, 441
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	98, 277
BsgI	GTGCAG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	455
BspACI	CCGC	2 cut(s)	69, 108
BspCNI	CTCAG	2 cut(s)	48, 442
BspMAI	CTGCAG	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	173, 198
Bst4CI	ACNGT	4 cut(s)	131, 385, 405, 460
Bst6I	CTCTTC	1 cut(s)	486
BstAUI	TGTACA	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	56, 450
BstEII	GGTNACC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	431
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 198, 246
BstNI	CCWGG	2 cut(s)	173, 198
BstNSI	RCATGY	1 cut(s)	233
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	171, 196
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	98, 277
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	9 cut(s)	55, 111, 120, 201, 249, 290, 376, 512, 532
CviKI_1	RGCY	9 cut(s)	55, 111, 120, 201, 249, 290, 376, 512, 532
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	2 cut(s)	56, 450
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	88
Eco72I	CACGTG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	171, 196
EcoT22I	ATGCAT	1 cut(s)	231
FaeI	CATG	1 cut(s)	233
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	229
FauI	CCCGC	1 cut(s)	62
FauNDI	CATATG	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	109, 112, 291
Fsp4HI	GCNGC	3 cut(s)	109, 112, 291
GluI	GCNGC	3 cut(s)	109, 112, 291
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	1 cut(s)	494
HphI	GGTGA	3 cut(s)	85, 143, 179
Hpy166II	GTNNAC	4 cut(s)	192, 268, 381, 456
Hpy188I	TCNGA	2 cut(s)	88, 313
Hpy188III	TCNNGA	3 cut(s)	142, 206, 498
Hpy8I	GTNNAC	4 cut(s)	192, 268, 381, 456
Hpy99I	CGWCG	2 cut(s)	50, 352
HpyAV	CCTTC	2 cut(s)	203, 449
HpyCH4III	ACNGT	4 cut(s)	131, 385, 405, 460
HpyCH4IV	ACGT	2 cut(s)	104, 281
HpyCH4V	TGCA	6 cut(s)	114, 137, 192, 229, 293, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 198, 246
HpyF3I	CTNAG	2 cut(s)	56, 450
HpySE526I	ACGT	2 cut(s)	104, 281
Hsp92II	CATG	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	130, 158, 183, 185, 210, 256, 494, 511
Lsp1109I	GCAGC	2 cut(s)	98, 277
LweI	GCATC	1 cut(s)	124
MaeII	ACGT	2 cut(s)	104, 281
MaeIII	GTNAC	3 cut(s)	100, 167, 178
MbiI	CCGCTC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	91, 138, 402
Mph1103I	ATGCAT	1 cut(s)	231
MseI	TTAA	2 cut(s)	224, 540
MspR9I	CCNGG	2 cut(s)	173, 198
MvaI	CCWGG	2 cut(s)	173, 198
MwoI	GCNNNNNNNGC	3 cut(s)	117, 198, 246
NdeI	CATATG	1 cut(s)	486
NlaIII	CATG	1 cut(s)	233
NmuCI	GTSAC	3 cut(s)	100, 167, 178
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	110, 113, 292
PleI	GAGTC	1 cut(s)	502
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	171, 196
PspCI	CACGTG	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	171, 196
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	224, 540
SatI	GCNGC	3 cut(s)	109, 112, 291
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	173, 198
SduI	GDGCHC	1 cut(s)	194
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	88
SsiI	CCGC	2 cut(s)	69, 108
StyD4I	CCNGG	2 cut(s)	171, 196
TaaI	ACNGT	4 cut(s)	131, 385, 405, 460
TaiI	ACGT	2 cut(s)	107, 284
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	224, 540
Tru9I	TTAA	2 cut(s)	224, 540
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	3 cut(s)	100, 167, 178
TseI	GCWGC	2 cut(s)	111, 290
Tsp45I	GTSAC	3 cut(s)	100, 167, 178
TspDTI	ATGAA	2 cut(s)	250, 473
TspRI	CASTG	1 cut(s)	388
VneI	GTGCAC	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.