Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23744830 .. 23745402

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGCCCATCCTACTATAAATATTCGGAGACTCGTCGTCCCGCTTTCTTTTTACCAAACAAAAAATTTTCGTCTTCGGGAGCAAACACACGTCTCTCTCTGGACTCCCTCTGGCACTCGAAGCTTCTCCAATCTCAAATCCTCAAATCCATGGAGGCTGCTCTTCCATCAAACCCTAACCCTCCTCCTCCAATCGAATCCCTAGATCCTCATCCCCCTCCTCCTGCCGAAACCCTAGCCTCAGATTCGAATGGCCCGCCTCAACCGCCGCCCACTGAAACCCTAGCTTCCGATGCTCAAAACCCCTTCCCAAATCCCCAGGCCGCTACTGAGAACGGTACTTCGACTGACGCCTGCAAGAAGCTTTCTATTACGAAGCCGCTGTTGTCGGAAAACGGATTGACCAACACCAATAGCGGCAACGAAAGGGATGGCTCGGGCGGGGAGGAGGAGACAACCAGCAGGCGCCGCCGCCGCAGCCGGTGGGATCGCTCAGCCCGAGTCGGAGAATCAGAGTGGTGGTGGGGAGACGGGCAGTGGGACGAGGAAGAGGAAGTCGCGGTGGGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

191

Amino Acids

20.82

Weight (kDa)

5.05

Isoelectric Point (pI)

79.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	465
AccII	CGCG	1 cut(s)	560
AclWI	GGATC	2 cut(s)	200, 495
AcsI	RAATTY	1 cut(s)	65
AcyI	GRCGYC	2 cut(s)	351, 466
AfaI	GTAC	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	89
AhdI	GACNNNNNGTC	1 cut(s)	36
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	124, 287, 364
AluI	AGCT	3 cut(s)	124, 287, 364
Alw26I	GTCTC	4 cut(s)	23, 98, 446, 522
AlwI	GGATC	2 cut(s)	200, 495
Ama87I	CYCGRG	2 cut(s)	436, 498
AoxI	GGCC	3 cut(s)	4, 253, 321
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	158, 477
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	3 cut(s)	4, 5, 254
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	2 cut(s)	436, 498
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	145, 489
BccI	CCATC	3 cut(s)	16, 175, 425
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	4 cut(s)	23, 98, 446, 522
BfaI	CTAG	3 cut(s)	203, 236, 284
BfoI	RGCGCY	1 cut(s)	469
BisI	GCNGC	9 cut(s)	159, 269, 324, 380, 418, 469, 472, 475, 478
BlpI	GCTNAGC	1 cut(s)	493
BlsI	GCNGC	9 cut(s)	160, 270, 325, 381, 419, 470, 473, 476, 479
Bme1390I	CCNGG	1 cut(s)	320
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmeT110I	CYCGRG	2 cut(s)	436, 498
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	4, 5, 254
BmiI	GGNNCC	2 cut(s)	6, 467
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	493
Bpu14I	TTCGAA	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	2 cut(s)	351, 466
BsaJI	CCNNGG	2 cut(s)	150, 318
Bse118I	RCCGGY	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	150, 318
BseGI	GGATG	3 cut(s)	8, 211, 436
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	255, 321, 507
BseRI	GAGGAG	5 cut(s)	174, 177, 210, 461, 464
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	145, 489
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	3 cut(s)	6, 255, 323
BshNI	GGYRCC	1 cut(s)	465
BsiHKCI	CYCGRG	2 cut(s)	436, 498
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	2 cut(s)	24, 554
BsmAI	GTCTC	4 cut(s)	23, 98, 446, 522
BsmBI	CGTCTC	2 cut(s)	98, 522
BsmFI	GGGAC	2 cut(s)	24, 554
BsnI	GGCC	3 cut(s)	6, 255, 323
BsoBI	CYCGRG	2 cut(s)	436, 498
Bsp119I	TTCGAA	1 cut(s)	248
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	205, 487
Bsp1720I	GCTNAGC	1 cut(s)	493
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	3 cut(s)	6, 255, 323
BspCNI	CTCAG	3 cut(s)	254, 322, 506
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	2 cut(s)	6, 467
BspPI	GGATC	2 cut(s)	200, 495
BspQI	GCTCTTC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	480
BssAI	RCCGGY	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	150, 318
BssMI	GATC	2 cut(s)	205, 487
BssNI	GRCGYC	2 cut(s)	351, 466
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	2 cut(s)	168, 543
BstACI	GRCGYC	2 cut(s)	351, 466
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	257, 355, 464
BstDEI	CTNAG	3 cut(s)	241, 330, 493
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	8, 211, 436
BstFNI	CGCG	1 cut(s)	560
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	2 cut(s)	208, 490
BstMAI	GTCTC	4 cut(s)	23, 98, 446, 522
BstMBI	GATC	2 cut(s)	205, 487
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 265, 293, 468, 474, 477
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	145, 489
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	6, 255, 323
BtgI	CCRYGG	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	8, 211, 436
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	273, 542
Cac8I	GCNNGC	3 cut(s)	257, 355, 464
CfoI	GCGC	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	480
Cfr13I	GGNCC	3 cut(s)	4, 5, 254
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	241, 330, 493
DinI	GGCGCC	1 cut(s)	467
DpnI	GATC	2 cut(s)	207, 489
DpnII	GATC	2 cut(s)	205, 487
DriI	GACNNNNNGTC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	168, 543
Eam1105I	GACNNNNNGTC	1 cut(s)	36
EarI	CTCTTC	2 cut(s)	168, 543
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	8
Eco88I	CYCGRG	2 cut(s)	436, 498
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	467
EheI	GGCGCC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	2 cut(s)	98, 522
FaeI	CATG	1 cut(s)	154
FaiI	YATR	2 cut(s)	18, 152
FaqI	GGGAC	2 cut(s)	24, 554
FatI	CATG	1 cut(s)	150
FauI	CCCGC	3 cut(s)	49, 264, 434
Fnu4HI	GCNGC	9 cut(s)	159, 269, 324, 380, 418, 469, 472, 475, 478
FokI	GGATG	2 cut(s)	198, 443
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	9 cut(s)	159, 269, 324, 380, 418, 469, 472, 475, 478
FspBI	CTAG	3 cut(s)	203, 236, 284
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	9 cut(s)	159, 269, 324, 380, 418, 469, 472, 475, 478
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	3 cut(s)	6, 255, 323
HapII	CCGG	1 cut(s)	481
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	468
Hin1I	GRCGYC	2 cut(s)	351, 466
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HindIII	AAGCTT	2 cut(s)	122, 362
HinfI	GANTC	6 cut(s)	31, 104, 197, 245, 501, 509
HpaII	CCGG	1 cut(s)	481
Hpy188I	TCNGA	6 cut(s)	28, 244, 292, 391, 506, 514
Hpy188III	TCNNGA	2 cut(s)	78, 101
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 265, 293, 468, 474, 477
HpyF3I	CTNAG	3 cut(s)	241, 330, 493
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	2 cut(s)	351, 466
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	466
KasI	GGCGCC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	205, 487
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	9 cut(s)	86, 97, 237, 305, 332, 367, 448, 472, 494
Lsp1109I	GCAGC	2 cut(s)	145, 489
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	3 cut(s)	203, 236, 284
MaeII	ACGT	1 cut(s)	91
MalI	GATC	2 cut(s)	207, 489
MboI	GATC	2 cut(s)	205, 487
MboII	GAAGA	3 cut(s)	66, 155, 560
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	65
Mly113I	GGCGCC	1 cut(s)	466
MlyI	GAGTC	3 cut(s)	25, 98, 510
MmeI	TCCRAC	2 cut(s)	369, 484
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	6 cut(s)	121, 265, 293, 468, 474, 477
NarI	GGCGCC	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	205, 487
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	2 cut(s)	6, 467
NspV	TTCGAA	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	197, 245, 509
PkrI	GCNGC	9 cut(s)	160, 270, 325, 381, 419, 470, 473, 476, 479
PleI	GAGTC	3 cut(s)	25, 98, 509
PluTI	GGCGCC	1 cut(s)	469
PpsI	GAGTC	3 cut(s)	25, 98, 509
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	6, 467
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	3 cut(s)	4, 5, 254
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	168
SatI	GCNGC	9 cut(s)	159, 269, 324, 380, 418, 469, 472, 475, 478
Sau3AI	GATC	2 cut(s)	205, 487
Sau96I	GGNCC	3 cut(s)	4, 5, 254
SchI	GAGTC	3 cut(s)	25, 98, 510
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	94, 126, 289, 366
SfaNI	GCATC	1 cut(s)	283
SfoI	GGCGCC	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	248
Sse9I	AATT	1 cut(s)	65
SspDI	GGCGCC	1 cut(s)	465
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	3 cut(s)	203, 236, 284
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	4 cut(s)	119, 195, 248, 344
TasI	AATT	1 cut(s)	65
TauI	GCSGC	7 cut(s)	271, 326, 382, 420, 471, 474, 477
TfiI	GAWTC	3 cut(s)	197, 245, 509
TscAI	CASTG	2 cut(s)	280, 542
TseI	GCWGC	2 cut(s)	158, 477
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	280, 542
XapI	RAATTY	1 cut(s)	65
XspI	CTAG	3 cut(s)	203, 236, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.