pycom07g22610

Peroxisomal membrane protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
23864232 .. 23864660
429 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGTTGTCTGCTAAAGACAAGAAAGCCTACTGTTATCCTCCAACTTCTGTGGTGCTCCTTAACCACGTTTCTTCTACTAATCCAATCCCAAATTCTCCGATCGAGCCAGTGCGATTCGTACTTCTTCATCGCCAACCACAACCAAACCATCTGCTACGCAAACTTTCAATCATGAACGACAAAGTTGACAAATTTGTTATCTTCCTGGCAAAGAGAGACGGCATTGACAAGCTTGTCAAAACCTTCCACCCCAAAATCGCGCAGCGAGCCAAGCAGTGGGAAGTTGCCTCCGGGCTAGCCGGAAGGCCTTTCGAACGGGCAGGTTTCTCACGGGATTCAATGCGTTGTGAAGCAGCCCTGGATCAACCCCTACGCTTCGGTTCCTAG

Protein Analysis

129

Amino Acids

14.49

Weight (kDa)

10.07

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 276
AccII CGCG 1 cut(s) 260
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 91, 191
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 2 cut(s) 168, 339
AjnI CCWGG 2 cut(s) 204, 357
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 369
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 262, 353
ApoI RAATTY 2 cut(s) 91, 191
AspLEI GCGC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 312
AsuNHI GCTAGC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 274, 365
BccI CCATC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 2 cut(s) 206, 359
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 2 cut(s) 296, 385
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 2 cut(s) 263, 354
BlsI GCNGC 2 cut(s) 264, 355
Bme1390I CCNGG 3 cut(s) 206, 292, 359
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 3 cut(s) 206, 292, 359
BmtI GCTAGC 1 cut(s) 299
Bpu14I TTCGAA 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 2 cut(s) 206, 359
BseDI CCNNGG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 274, 365
Bsh1236I CGCG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 291, 300
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 210
BsmBI CGTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 307
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 99, 361
BspANI GGCC 1 cut(s) 307
BspFNI CGCG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 311
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 2 cut(s) 99, 361
Bst2UI CCWGG 2 cut(s) 206, 359
Bst4CI ACNGT 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 267, 297
BstFNI CGCG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 2 cut(s) 102, 364
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 99, 361
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 266, 271
BstNI CCWGG 2 cut(s) 206, 359
BstSCI CCNGG 3 cut(s) 204, 290, 357
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 274, 365
BsuRI GGCC 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 114, 281
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 267, 297
CciI TCATGA 1 cut(s) 171
CfoI GCGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 119
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 1 cut(s) 172
CviJI RGCY 8 cut(s) 26, 106, 232, 269, 295, 299, 307, 356
CviKI_1 RGCY 8 cut(s) 26, 106, 232, 269, 295, 299, 307, 356
CviQI GTAC 1 cut(s) 119
DpnI GATC 2 cut(s) 101, 363
DpnII GATC 2 cut(s) 99, 361
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 204, 357
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 1 cut(s) 175
FaiI YATR 1 cut(s) 173
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 263, 354
Fsp4HI GCNGC 2 cut(s) 263, 354
FspBI CTAG 2 cut(s) 296, 385
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 263, 354
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 291, 300
HhaI GCGC 1 cut(s) 262
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 114, 335
HpaII CCGG 2 cut(s) 291, 300
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 253, 297
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 271
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 2 cut(s) 99, 361
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 120, 191, 218, 304, 306, 313, 344, 371
Lsp1109I GCAGC 2 cut(s) 274, 365
MaeI CTAG 2 cut(s) 296, 385
MaeII ACGT 1 cut(s) 66
MalI GATC 2 cut(s) 101, 363
MboI GATC 2 cut(s) 99, 361
MboII GAAGA 3 cut(s) 63, 116, 193
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 91, 191
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 2 cut(s) 48, 298
MseI TTAA 1 cut(s) 60
MspI CCGG 2 cut(s) 291, 300
MspR9I CCNGG 3 cut(s) 206, 292, 359
MvaI CCWGG 2 cut(s) 206, 359
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 266, 271
NciI CCSGG 1 cut(s) 292
NdeII GATC 2 cut(s) 99, 361
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 382
NspV TTCGAA 1 cut(s) 312
PagI TCATGA 1 cut(s) 171
PceI AGGCCT 1 cut(s) 307
PfeI GAWTC 2 cut(s) 114, 335
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 2 cut(s) 264, 355
Ple19I CGATCG 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 204, 357
PspGI CCWGG 2 cut(s) 204, 357
PspN4I GGNNCC 1 cut(s) 382
PvuI CGATCG 1 cut(s) 102
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 263, 354
Sau3AI GATC 2 cut(s) 99, 361
ScrFI CCNGG 3 cut(s) 206, 292, 359
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 69, 234, 245, 325
SfuI TTCGAA 1 cut(s) 312
Sse9I AATT 2 cut(s) 91, 191
SseBI AGGCCT 1 cut(s) 307
SspMI CTAG 2 cut(s) 296, 385
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 3 cut(s) 204, 290, 357
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 102, 312
TasI AATT 2 cut(s) 91, 191
TfiI GAWTC 2 cut(s) 114, 335
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 2 cut(s) 114, 281
TseI GCWGC 2 cut(s) 262, 353
TspDTI ATGAA 2 cut(s) 116, 188
TspRI CASTG 2 cut(s) 114, 281
Van91I CCANNNNNTGG 1 cut(s) 276
XapI RAATTY 2 cut(s) 91, 191
XspI CTAG 2 cut(s) 296, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.