pycom07g22630

Luc7-like protein 3

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
23868481 .. 23869325
845 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGGTTCGTGATTTTATCGCTGAGTTCAAGGAATCCAAGGAGAAGGCAAGGGAAGAAGAAAGGTTAGCGAGGGAGAAAGAGGCAGAAGAACGGAGGAAACAGAGGGAGAAGGAAGAGGAGAATAGAAGGAGAAGTAATTCAAGTGATAGGGACAGGTACCGTGATAGAGATCGTGACAGGGAGCGAGATAGATATCGAGAACGAGACTTGGATCGTGAAAGGTCGAGGGAGTGGAATGGCAGAAGTAGTCGGGATGGAGGGAGAGGGGTGGACAGGAGGTCCAAGAATGGAAGAGATGGAGGCAGGGATAGGTACCGTGATCGAAGCAGGCCCGAAAATGTGTGCATGATTGACACCGCAGTTGGCGACATGATGGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

15.71

Weight (kDa)

9.81

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 156, 312
AccB1I GGYRCC 2 cut(s) 156, 312
AciI CCGC 1 cut(s) 357
AclWI GGATC 1 cut(s) 219
AfaI GTAC 2 cut(s) 158, 314
AgsI TTSAA 2 cut(s) 28, 141
AhdI GACNNNNNGTC 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 219
AoxI GGCC 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 136
Asp718I GGTACC 2 cut(s) 156, 312
AspS9I GGNCC 2 cut(s) 279, 330
AvaII GGWCC 1 cut(s) 279
BanI GGYRCC 2 cut(s) 156, 312
BccI CCATC 3 cut(s) 248, 290, 367
BcoDI GTCTC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 279
BmeRI GACNNNNNGTC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 279, 330
BmiI GGNNCC 2 cut(s) 158, 314
BsaBI GATNNNNATC 2 cut(s) 168, 192
BsaJI CCNNGG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 168, 192
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 2 cut(s) 168, 192
BseMII CTCAG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 331
BshNI GGYRCC 2 cut(s) 156, 312
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 3 cut(s) 169, 211, 319
BspACI CCGC 1 cut(s) 357
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 158, 314
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 2 cut(s) 156, 312
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 169, 211, 319
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 161, 317
Bst6I CTCTTC 2 cut(s) 108, 286
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 3 cut(s) 172, 214, 322
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 169, 211, 319
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 279, 330
Csp6I GTAC 2 cut(s) 157, 313
CviAII CATG 2 cut(s) 346, 370
CviJI RGCY 1 cut(s) 331
CviKI_1 RGCY 1 cut(s) 331
CviQI GTAC 2 cut(s) 157, 313
DdeI CTNAG 1 cut(s) 21
DpnI GATC 3 cut(s) 171, 213, 321
DpnII GATC 3 cut(s) 169, 211, 319
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 108, 286
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 2 cut(s) 108, 286
Eco130I CCWWGG 1 cut(s) 36
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 279
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 349, 373
FaiI YATR 2 cut(s) 347, 371
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 345, 369
FokI GGATG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 2 cut(s) 349, 373
HinfI GANTC 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 271
Hpy188III TCNNGA 5 cut(s) 8, 173, 197, 215, 251
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 3 cut(s) 37, 103, 120
HpyCH4III ACNGT 2 cut(s) 161, 317
HpyCH4V TGCA 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 349, 373
KpnI GGTACC 2 cut(s) 160, 316
Kzo9I GATC 3 cut(s) 169, 211, 319
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 139, 163, 259, 289, 313
MaeIII GTNAC 1 cut(s) 173
MalI GATC 3 cut(s) 171, 213, 321
MboI GATC 3 cut(s) 169, 211, 319
MboII GAAGA 5 cut(s) 65, 68, 98, 125, 303
MluCI AATT 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 1 cut(s) 382
NdeII GATC 3 cut(s) 169, 211, 319
NlaIII CATG 2 cut(s) 349, 373
NlaIV GGNNCC 2 cut(s) 158, 314
NmuCI GTSAC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 158, 314
PspPI GGNCC 2 cut(s) 279, 330
RsaI GTAC 2 cut(s) 158, 314
RsaNI GTAC 2 cut(s) 157, 313
SaqAI TTAA 1 cut(s) 382
Sau3AI GATC 3 cut(s) 169, 211, 319
Sau96I GGNCC 2 cut(s) 279, 330
SetI ASST 5 cut(s) 65, 158, 224, 281, 314
SinI GGWCC 1 cut(s) 279
Sse9I AATT 1 cut(s) 136
SsiI CCGC 1 cut(s) 357
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 161, 317
TaqI TCGA 3 cut(s) 196, 224, 322
TasI AATT 1 cut(s) 136
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.