Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23986101 .. 23987582

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAACCAGGCATTGAGTATCAGGCAAAATGGATCTGCAAGTGGCGCTCGCCCTAATCCTCAGGGATCATTTCACTACGATCAAATTAATATCACTGATTCATACGTGATAAAGACTGTTCCACCACAGACAATTGGTGGGAAACTGCGTGCTACGCTTAATGGAATCTCGTTTGGCAACCTTACTACACCAATCAGGCTTGCTGATCAGAATAAAGTTGGAGGAGCCTATAAGCTTGATTTCCCCAATAAGCCACTTAATGGAACCCCACGAACAGACATATCTGTCATCAATGCTACATATAAGGGTTTTATTGAAATCATTTTCCAGAACAATGACACCACAGTGCAGAGTTTCCATTTGGATGGATATTTCTTTTTTGTGGTTGGGATGGATTATGGAGATTGGACTGAAAACAGCAGAAATGGATATAATAGGTGGGACGCGGTTACTCGATGCACTGCACAGGTTTTCCCTGGGGCATGGACAGCGGTGTTTGTCTCGCTTGACAATCCTGGAGCGTGGAATCTTAGAACTCAAAACCTTGATAGATGGTATCTTGGCCAAGAGACATATCTGAGAATCGTCAATCCAGAGGAGAAAGGTGAAACAGAGTTCGGTGTGCCCGATAATGTTCTGTATTGCGGTGCTCTAGCCAGCAGACAGAAGGAACAGAAGCACTCTTCTGCAACATCAATTCCCGGGGGAAATCGGAGGCTGTTCATCTCTCTTCTAGCCGCGTTCTTCGCTTTGGTCTGTACTTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016020 GO:0016491 GO:0016722 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

257

Amino Acids

28.49

Weight (kDa)

8.73

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	64 - 199	4.3e-31	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	2 cut(s)	446, 740
AciI	CCGC	4 cut(s)	446, 491, 645, 738
AclWI	GGATC	2 cut(s)	40, 73
AcoI	YGGCCR	1 cut(s)	562
AfaI	GTAC	1 cut(s)	760
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	3 cut(s)	6, 475, 514
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	505, 563
AlwI	GGATC	2 cut(s)	40, 73
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	1 cut(s)	562
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	47
AsuC2I	CCSGG	2 cut(s)	702, 703
AsuHPI	GGTGA	1 cut(s)	617
AvaI	CYCGRG	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	652
BccI	CCATC	3 cut(s)	359, 385, 546
BciT130I	CCWGG	3 cut(s)	8, 477, 516
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	702, 703
BcoDI	GTCTC	2 cut(s)	505, 563
BfaI	CTAG	2 cut(s)	653, 734
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	1 cut(s)	738
BlsI	GCNGC	1 cut(s)	739
Bme1390I	CCNGG	5 cut(s)	8, 477, 516, 702, 703
BmeT110I	CYCGRG	1 cut(s)	701
BmiI	GGNNCC	2 cut(s)	226, 265
BmrFI	CCNGG	5 cut(s)	8, 477, 516, 702, 703
BmsI	GCATC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	537
BpuMI	CCSGG	2 cut(s)	702, 703
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	4 cut(s)	475, 476, 701, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	8, 477, 516
BseDI	CCNNGG	4 cut(s)	475, 476, 701, 702
BseGI	GGATG	2 cut(s)	370, 396
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	74, 569
BseRI	GAGGAG	2 cut(s)	237, 611
BseSI	GKGCMC	1 cut(s)	627
BsgI	GTGCAG	2 cut(s)	368, 447
Bsh1236I	CGCG	2 cut(s)	446, 740
BshFI	GGCC	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	652
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	505, 563
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	627, 652
Bsp143I	GATC	4 cut(s)	32, 65, 79, 205
BspACI	CCGC	4 cut(s)	446, 491, 645, 738
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	2 cut(s)	73, 570
BspFNI	CGCG	2 cut(s)	446, 740
BspLI	GGNNCC	2 cut(s)	226, 265
BspPI	GGATC	2 cut(s)	40, 73
BssECI	CCNNGG	4 cut(s)	475, 476, 701, 702
BssMI	GATC	4 cut(s)	32, 65, 79, 205
Bst2UI	CCWGG	3 cut(s)	8, 477, 516
Bst4CI	ACNGT	2 cut(s)	118, 346
Bst6I	CTCTTC	2 cut(s)	688, 735
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	49, 150, 201, 658
BstDEI	CTNAG	3 cut(s)	60, 530, 578
BstF5I	GGATG	2 cut(s)	370, 396
BstFNI	CGCG	2 cut(s)	446, 740
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	35, 68, 82, 208
BstMAI	GTCTC	2 cut(s)	505, 563
BstMBI	GATC	4 cut(s)	32, 65, 79, 205
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 154, 488, 746
BstNI	CCWGG	3 cut(s)	8, 477, 516
BstSCI	CCNGG	5 cut(s)	6, 475, 514, 700, 701
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	2 cut(s)	446, 740
BstX2I	RGATCY	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	370, 396
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	3 cut(s)	93, 351, 459
Cac8I	GCNNGC	4 cut(s)	49, 150, 201, 658
CfoI	GCGC	1 cut(s)	47
Cfr9I	CCCGGG	1 cut(s)	701
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	1 cut(s)	483
CviJI	RGCY	8 cut(s)	199, 227, 235, 253, 564, 656, 718, 737
CviKI_1	RGCY	8 cut(s)	199, 227, 235, 253, 564, 656, 718, 737
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	3 cut(s)	60, 530, 578
DpnI	GATC	4 cut(s)	34, 67, 81, 207
DpnII	GATC	4 cut(s)	32, 65, 79, 205
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	688, 735
EarI	CTCTTC	2 cut(s)	688, 735
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	701
EcoRII	CCWGG	3 cut(s)	6, 475, 514
FaeI	CATG	1 cut(s)	486
FaiI	YATR	9 cut(s)	103, 231, 281, 301, 303, 399, 432, 484, 574
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	1 cut(s)	482
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	738
FokI	GGATG	2 cut(s)	377, 403
Fsp4HI	GCNGC	1 cut(s)	738
FspBI	CTAG	2 cut(s)	653, 734
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	1 cut(s)	702
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	486
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	4 cut(s)	98, 165, 526, 582
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	1 cut(s)	617
Hpy188I	TCNGA	3 cut(s)	210, 579, 714
Hpy188III	TCNNGA	2 cut(s)	328, 593
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	2 cut(s)	118, 346
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	38, 349, 459, 464, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 154, 488, 746
HpyF3I	CTNAG	3 cut(s)	60, 530, 578
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	486
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	32, 65, 79, 205
LmnI	GCTCC	2 cut(s)	224, 518
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	2 cut(s)	653, 734
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	4 cut(s)	34, 67, 81, 207
MboI	GATC	4 cut(s)	32, 65, 79, 205
MboII	GAAGA	3 cut(s)	675, 722, 736
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	627, 652
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	3 cut(s)	84, 132, 696
MluNI	TGGCCA	1 cut(s)	564
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	4 cut(s)	69, 215, 589, 708
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	3 cut(s)	87, 159, 258
MslI	CAYNNNNRTG	2 cut(s)	344, 363
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	5 cut(s)	8, 477, 516, 702, 703
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	3 cut(s)	8, 477, 516
MvnI	CGCG	2 cut(s)	446, 740
MwoI	GCNNNNNNNGC	4 cut(s)	44, 154, 488, 746
NciI	CCSGG	2 cut(s)	702, 703
NdeII	GATC	4 cut(s)	32, 65, 79, 205
NlaIII	CATG	1 cut(s)	486
NlaIV	GGNNCC	2 cut(s)	226, 265
OliI	CACNNNNGTG	1 cut(s)	344
PasI	CCCWGGG	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PfeI	GAWTC	4 cut(s)	98, 165, 526, 582
PflMI	CCANNNNNTGG	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	739
Ppu21I	YACGTR	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	3 cut(s)	6, 475, 514
PspGI	CCWGG	3 cut(s)	6, 475, 514
PspN4I	GGNNCC	2 cut(s)	226, 265
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
RseI	CAYNNNNRTG	2 cut(s)	344, 363
SaqAI	TTAA	3 cut(s)	87, 159, 258
SatI	GCNGC	1 cut(s)	738
Sau3AI	GATC	4 cut(s)	32, 65, 79, 205
ScrFI	CCNGG	5 cut(s)	8, 477, 516, 702, 703
SduI	GDGCHC	2 cut(s)	627, 652
SetI	ASST	7 cut(s)	108, 183, 237, 440, 471, 546, 607
SfaNI	GCATC	1 cut(s)	446
SmaI	CCCGGG	1 cut(s)	703
SmiMI	CAYNNNNRTG	2 cut(s)	344, 363
Sse9I	AATT	3 cut(s)	84, 132, 696
SsiI	CCGC	4 cut(s)	446, 491, 645, 738
SspMI	CTAG	2 cut(s)	653, 734
StyD4I	CCNGG	5 cut(s)	6, 475, 514, 700, 701
TaaI	ACNGT	2 cut(s)	118, 346
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	454
TasI	AATT	3 cut(s)	84, 132, 696
TatI	WGTACW	1 cut(s)	758
TauI	GCSGC	1 cut(s)	740
TfiI	GAWTC	4 cut(s)	98, 165, 526, 582
Tru1I	TTAA	3 cut(s)	87, 159, 258
Tru9I	TTAA	3 cut(s)	87, 159, 258
TscAI	CASTG	3 cut(s)	100, 351, 466
TspDTI	ATGAA	3 cut(s)	17, 90, 712
TspMI	CCCGGG	1 cut(s)	701
TspRI	CASTG	3 cut(s)	100, 351, 466
Van91I	CCANNNNNTGG	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	87
XmaI	CCCGGG	1 cut(s)	701
XspI	CTAG	2 cut(s)	653, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.