Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24172017 .. 24174475

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCATTAAGCTTGACCTTGAAAAGGTGTATGACTTCCTCGGCTGGGATTATATTAAAGGTTTCAGAGGTGTATGCCAAAGATTTCAGGGTGCCATATCTGCATTAGCCTCACTTCATGGTCATCTGTTGATAGCTCAAGGTCCTAAAATTACTTTAAACAAGTGGAATGGCACTGAACTGAATGGTGTGGTATTTTTTGATGTTCCGCCATTCATTGGCTGTGTTACGCCTCTTGATGAACTCACATTTCGTAGGTTGCAGTCACTACAGAAAAAGCTTGTTGATGCAGTTGCCCATGTTGCTGGTTTTAATCCAAGAGCTTTCCGCCAGTTTCGGTCAAATGGAAATGCTCATCGGCCTGGCCCTGATACCATAGTTGACTGCGAGCTTCTAACCCAATCAACACCATCAACAGTATTTGATGGCATGATAAAAACCGGGCCTAACAAGTGTACTTCAATTTTCATCCTTGCAGTTATGAGATGCTTCTATTGGAGGAACAGCTTGAAATTGCAAACCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

176

Amino Acids

19.56

Weight (kDa)

9.37

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF_A	PF03178	73 - 134	4.9e-12	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	218
AciI	CCGC	2 cut(s)	209, 328
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	3 cut(s)	25, 46, 218
AgsI	TTSAA	3 cut(s)	23, 462, 511
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	6 cut(s)	13, 137, 280, 323, 391, 507
AluI	AGCT	6 cut(s)	13, 137, 280, 323, 391, 507
AoxI	GGCC	4 cut(s)	3, 359, 364, 443
AspS9I	GGNCC	3 cut(s)	143, 365, 443
AsuC2I	CCSGG	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	143
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	92
BccI	CCATC	2 cut(s)	418, 419
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	442
BfmI	CTRYAG	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	363, 442
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	143, 365, 443
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	363, 442
BmsI	GCATC	2 cut(s)	277, 476
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 46, 218
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	25, 46, 218
BseNI	ACTGG	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	45
BshFI	GGCC	4 cut(s)	5, 361, 366, 445
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	441, 522
BslI	CCNNNNNNNGG	3 cut(s)	25, 46, 218
BsnI	GGCC	4 cut(s)	5, 361, 366, 445
BspACI	CCGC	2 cut(s)	209, 328
BspANI	GGCC	4 cut(s)	5, 361, 366, 445
BspLI	GGNNCC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	389
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 302
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	361, 440
BstSFI	CTRYAG	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	5, 361, 366, 445
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	389
Cfr13I	GGNCC	3 cut(s)	143, 365, 443
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	3 cut(s)	119, 299, 430
CviQI	GTAC	1 cut(s)	456
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	198, 317
Eco47I	GGWCC	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	122, 302, 433
FaiI	YATR	9 cut(s)	33, 54, 76, 98, 120, 300, 377, 431, 482
FatI	CATG	3 cut(s)	118, 298, 429
FokI	GGATG	1 cut(s)	455
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	4 cut(s)	5, 361, 366, 445
HapII	CCGG	2 cut(s)	441, 522
Hin1II	CATG	3 cut(s)	122, 302, 433
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	2 cut(s)	11, 278
HpaII	CCGG	2 cut(s)	441, 522
Hpy166II	GTNNAC	2 cut(s)	382, 456
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	382, 456
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	5 cut(s)	104, 262, 290, 476, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 302
Hsp92II	CATG	3 cut(s)	122, 302, 433
LpnPI	CCDG	8 cut(s)	31, 74, 291, 344, 348, 375, 381, 454
LweI	GCATC	2 cut(s)	277, 476
MaeIII	GTNAC	2 cut(s)	226, 264
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	150, 462, 512
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	50, 62, 121, 243, 492
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	9, 57, 158, 312
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	441, 522
MspR9I	CCNGG	2 cut(s)	363, 442
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	101, 302
NciI	CCSGG	1 cut(s)	442
NlaIII	CATG	3 cut(s)	122, 302, 433
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	3 cut(s)	143, 365, 443
PspPPI	RGGWCCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	9, 57, 158, 312
Sau96I	GGNCC	3 cut(s)	143, 365, 443
ScrFI	CCNGG	2 cut(s)	363, 442
SfaNI	GCATC	2 cut(s)	277, 476
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	3 cut(s)	150, 462, 512
SsiI	CCGC	2 cut(s)	209, 328
StyD4I	CCNGG	2 cut(s)	361, 440
TaaI	ACNGT	1 cut(s)	418
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	3 cut(s)	150, 462, 512
TatI	WGTACW	1 cut(s)	455
Tru1I	TTAA	4 cut(s)	9, 57, 158, 312
Tru9I	TTAA	4 cut(s)	9, 57, 158, 312
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	4 cut(s)	107, 205, 255, 457
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.