Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24482391 .. 24487530

Gene Structure 5140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGATCGAGCACAAATTCTCCCATCCCAATAAGCAGCTTTGTGTGATTACCTGTGGGGATGACAAGACAATCAAGGTGTGGGATGCTACAACCGGTGCAAAACAATATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGCCCACATTATAAGGAAAACATTCAGTTCATCTTTTCAACAGCACTGGATGGAAAGATAAAGGCTTGGATGTATGACAATTTGGGATCTCGAGCTGATTATGATGCTCCTGGTCGCTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTATTTTCATGTGGGACAAGTAAAGATGGCGAGTCATATATTGTTGAATGGAATGAAAGTGAATGGGTTGTGAAGAGGATCTATCAAGGCTTACGCAAGCGTTCCTTTGGTGTTGTGCAATTCGATACTACTAAAAACCGGTATTTGGCTGCTGGTGATGATTTTTCTATTAAATTTTGGGACATGGACAATATTCAACTTTTGACAACTGTTGATGGAGGCCTACCAGCAGGCCCTTGTATCCGCTTTAATAAGGATGGCACTCTCTTGGCTGTTTCTTCCAATGAGAATGGGATTAAAGTTTTGGCAAATGCTGATGGAATGCAGTTGTTGCGAACATTTGAGAATCATCTTGCTTATGATGCATCAAGGACCTCTAAAGTTGTGACGAAGCCTGCAATAATCCGAATTCAAGTTGCTGCTACTGCTAGCAGTGCTGGACTGGCTGAAAGATTTGCATCTGCAGCTTCTCTTTCTGGAATGAATGGGGATGCGCGGAACTTGGGGGACGTGAAACCTAGAATAGCTGAAGAATCCAATGACAAATCAAAGATTTGGAAACTCACTGAAATTAGCAAACCATCTCAATGCTTCCTTAGGCTACCCGAAAACGTGAGAGTAACCAAGATTTCGAGGTTAATCTATAATAATTCAGGAAGTGCAATTTTGGCATTAGCATCAAATGCCATCCATTTGTTATGGAAATGGCCGATGAGTAAGCCTGACTTGATTGGCAAGGCAACTGCTATTGTTTCACCTCAACTGTGGCAACCCTCAAGTGGCATTTTAATGACCAATGATATTCCTGACACAAGTCCTGAAGAAGCTGTTCCTTGCTTCGCTTTGTCCAAGAATGATTTTTATTTAATATCAGCATCTGGTGGAAAGATTTCCCTGTTCAATATGATGACATTTAAGACACTGAGAACTTTCATGCTGCCACCACCTGCTGCAACATTTCTTGCATTCTATCCTCAAGATAACAACATTATGGCTATTGGAATGGATAATTCTGCAATTCTGATATATAATGTCCGGGTAGATGAGGTTAAGAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTAGCATTTTCTCATGTACTGAATGTGCTAGTTTCATCAGGAGCAGATGCTCAGCTCTGCGTATGGAACCCTGATGGATGGGAGAAGCTGAAGTGCAGATTCTTGCAGCTTCCAGCTGGGAGAACAACAGCTTCGCTATCAGACACGTGTGTACAGTTTCATCACGACCAGCAACAGTTCTTGGTTGTGCACGAGACTCTACTTGCCATATATGAAACAACAAAACTAGAATGTGTAAAGCAGTGGGTCCCACGTGATTCTGCTGCACCAATCTCTCATGCAACATTCTCATGCGATAGCCAGCTTGTATATGCCATCTTTTTAGATGCTACCGTGTGTGTGTTCAGCACTGCAAATCTCAGACTGCAGTGTCGTATTAATCCTTCTGCTTATCTTCCTGCTAATGTCAGTTGTAATGTACAGCCCCTCGTTATTGCAGCGCATCCAAAAGAAGCAAATCAGTTTGCATTAGGACTATCGGATGGTGCTGTTCATGTCTTTGAGCCCCTTGAATCTGAAGGCAAATGGGGTGTGGCTCCACCTGTTGAAAATGGTTCGGCAAGCAGTGCGCCATCTACTCAAGTTGGAGCTGCAGGTTTGGATCAAGCACAGAGATCGATCAAGCGGCTGACAGAGCACAAGTTCTTTTACATGCTTGGCTTGCTGGCCTATTCCAAATACAGTCTGTGTTCTTCATGTAGTGTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

700

Amino Acids

76.9

Weight (kDa)

8.16

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	8 - 212	1.1e-20	THOC3 beta-propeller domain
WD40_Prp19	PF24814	8 - 201	3.3e-13	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	8 - 168	1.6e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	11 - 169	5.7e-15	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	14 - 108	7.6e-09	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	14 - 108	3e-07	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	14 - 74	4e-09	WDHD1 first WD40 domain
EIF3I	PF24805	15 - 220	2.5e-06	EIF3I
Beta-prop_WDR5	PF25175	90 - 218	3e-07	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	372 - 486	1.1e-12	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	374 - 490	2.9e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	374 - 582	1.5e-17	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	375 - 582	3.2e-13	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	375 - 492	1e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	376 - 592	6.5e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	378 - 575	5.1e-12	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	382 - 486	2.2e-08	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	384 - 569	9.7e-12	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	385 - 486	7.2e-11	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	392 - 493	4.7e-07	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	396 - 487	6.9e-06	WDR90/POC16, second beta-propeller
Beta-prop_RIG_1st	PF23770	418 - 470	6.9e-06	RIG first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AarI	CACCTGC	1 cut(s)	1255
AasI	GACNNNNNNGTC	1 cut(s)	1758
Acc36I	ACCTGC	2 cut(s)	1255, 1973
AccII	CGCG	1 cut(s)	796
AciI	CCGC	3 cut(s)	544, 796, 2014
AclWI	GGATC	3 cut(s)	238, 386, 1998
AcoI	YGGCCR	1 cut(s)	1007
AcsI	RAATTY	3 cut(s)	14, 473, 708
AcuI	CTGAAG	4 cut(s)	849, 1140, 1499, 1926
AcvI	CACGTG	2 cut(s)	1536, 1643
AfaI	GTAC	4 cut(s)	295, 1407, 1542, 1809
AfiI	CCNNNNNNNGG	2 cut(s)	445, 1079
AflIII	ACRYGT	2 cut(s)	1533, 1535
AgeI	ACCGGT	2 cut(s)	92, 438
AgsI	TTSAA	8 cut(s)	116, 183, 347, 497, 713, 1201, 1901, 1937
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	1 cut(s)	253
Alw21I	GWGCWC	4 cut(s)	12, 269, 1581, 2028
Alw26I	GTCTC	1 cut(s)	1577
Alw44I	GTGCAC	2 cut(s)	265, 1577
AlwI	GGATC	3 cut(s)	238, 386, 1998
AlwNI	CAGNNNCTG	1 cut(s)	1178
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	6 cut(s)	520, 532, 1007, 1366, 1387, 2055
ApaLI	GTGCAC	2 cut(s)	265, 1577
ApoI	RAATTY	3 cut(s)	14, 473, 708
AseI	ATTAAT	1 cut(s)	1767
AsiGI	ACCGGT	2 cut(s)	92, 438
Asp700I	GAANNNNTTC	3 cut(s)	165, 1128, 1189
AspLEI	GCGC	3 cut(s)	796, 1831, 1960
AspS9I	GGNCC	3 cut(s)	533, 672, 1636
AsuC2I	CCSGG	1 cut(s)	1337
AsuHPI	GGTGA	2 cut(s)	467, 1047
AsuNHI	GCTAGC	1 cut(s)	728
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	2 cut(s)	672, 1636
AxyI	CCTNAGG	1 cut(s)	896
BaeGI	GKGCMC	2 cut(s)	269, 1581
BanII	GRGCYC	1 cut(s)	1896
BarI	GAAGNNNNNNTAC	2 cut(s)	1756, 1788
BauI	CACGAG	1 cut(s)	1580
BbrPI	CACGTG	2 cut(s)	1536, 1643
Bbv12I	GWGCWC	4 cut(s)	12, 269, 1581, 2028
BcgI	CGANNNNNNTGC	2 cut(s)	1986, 2020
BciT130I	CCWGG	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	1 cut(s)	1337
BcoDI	GTCTC	1 cut(s)	1577
BfaI	CTAG	5 cut(s)	729, 819, 1391, 1418, 1616
BfmI	CTRYAG	3 cut(s)	762, 1754, 1980
BfuAI	ACCTGC	2 cut(s)	1255, 1973
BfuI	GTATCC	1 cut(s)	551
BlpI	GCTNAGC	1 cut(s)	1440
Bme1390I	CCNGG	2 cut(s)	255, 1337
Bme18I	GGWCC	2 cut(s)	672, 1636
BmeT110I	CYCGRG	1 cut(s)	234
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	3 cut(s)	533, 672, 1636
BmiI	GGNNCC	5 cut(s)	129, 1457, 1637, 1638, 1926
BmrFI	CCNGG	2 cut(s)	255, 1337
BmtI	GCTAGC	1 cut(s)	732
BoxI	GACNNNNGTC	1 cut(s)	1113
BpmI	CTGGAG	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	1440
BpuEI	CTTGAG	3 cut(s)	1060, 1260, 1953
BpuMI	CCSGG	1 cut(s)	1337
Bsa29I	ATCGAT	1 cut(s)	2006
BsaAI	YACGTR	2 cut(s)	1536, 1643
BsaBI	GATNNNNATC	1 cut(s)	757
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	92, 438
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 1079
Bse118I	RCCGGY	2 cut(s)	92, 438
Bse1I	ACTGG	4 cut(s)	131, 195, 747, 1390
Bse21I	CCTNAGG	1 cut(s)	896
Bse8I	GATNNNNATC	1 cut(s)	757
BseBI	CCWGG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	2006
BseDI	CCNNGG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	757
BseLI	CCNNNNNNNGG	2 cut(s)	445, 1079
BseMII	CTCAG	3 cut(s)	1214, 1454, 1762
BseNI	ACTGG	4 cut(s)	131, 195, 747, 1390
BseSI	GKGCMC	2 cut(s)	269, 1581
BseYI	CCCAGC	1 cut(s)	1505
BsgI	GTGCAG	2 cut(s)	1504, 1638
Bsh1236I	CGCG	1 cut(s)	796
BshFI	GGCC	6 cut(s)	522, 534, 1009, 1368, 1389, 2057
BshTI	ACCGGT	2 cut(s)	92, 438
BshVI	ATCGAT	1 cut(s)	2006
BsiHKAI	GWGCWC	4 cut(s)	12, 269, 1581, 2028
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	93, 439, 1336
BslFI	GGGAC	4 cut(s)	328, 494, 821, 1622
BslI	CCNNNNNNNGG	2 cut(s)	445, 1079
BsmAI	GTCTC	1 cut(s)	1577
BsmFI	GGGAC	4 cut(s)	328, 494, 821, 1622
BsmI	GAATGC	2 cut(s)	627, 1265
BsnI	GGCC	6 cut(s)	522, 534, 1009, 1368, 1389, 2057
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	5 cut(s)	12, 269, 1581, 1896, 2028
Bsp1407I	TGTACA	2 cut(s)	1540, 1807
Bsp143I	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
Bsp1720I	GCTNAGC	1 cut(s)	1440
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	3 cut(s)	544, 796, 2014
BspANI	GGCC	6 cut(s)	522, 534, 1009, 1368, 1389, 2057
BspCNI	CTCAG	3 cut(s)	1215, 1453, 1761
BspDI	ATCGAT	1 cut(s)	2006
BspFNI	CGCG	1 cut(s)	796
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	5 cut(s)	129, 1457, 1637, 1638, 1926
BspMAI	CTGCAG	3 cut(s)	766, 1758, 1984
BspMI	ACCTGC	2 cut(s)	1255, 1973
BspOI	GCTAGC	1 cut(s)	732
BspPI	GGATC	3 cut(s)	238, 386, 1998
BsrFI	RCCGGY	2 cut(s)	92, 438
BsrGI	TGTACA	2 cut(s)	1540, 1807
BsrI	ACTGG	4 cut(s)	131, 195, 747, 1390
BssAI	RCCGGY	2 cut(s)	92, 438
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
BssSI	CACGAG	1 cut(s)	1580
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	1580
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	6 cut(s)	511, 1065, 1545, 1566, 1723, 2072
Bst6I	CTCTTC	1 cut(s)	368
BstAPI	GCANNNNNTGC	3 cut(s)	631, 983, 1955
BstAUI	TGTACA	2 cut(s)	1540, 1807
BstBAI	YACGTR	2 cut(s)	1536, 1643
BstC8I	GCNNGC	9 cut(s)	398, 532, 696, 730, 1358, 1691, 1951, 2051, 2055
BstDEI	CTNAG	5 cut(s)	896, 1223, 1374, 1440, 1748
BstDSI	CCRYGG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	796
BstHHI	GCGC	3 cut(s)	796, 1831, 1960
BstKTI	GATC	6 cut(s)	6, 233, 381, 1993, 2006, 2010
BstMAI	GTCTC	1 cut(s)	1577
BstMBI	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	2044
BstPAI	GACNNNNGTC	1 cut(s)	1113
BstSCI	CCNGG	2 cut(s)	253, 1335
BstSFI	CTRYAG	3 cut(s)	762, 1754, 1980
BstSLI	GKGCMC	2 cut(s)	269, 1581
BstUI	CGCG	1 cut(s)	796
BstX2I	RGATCY	2 cut(s)	230, 378
BstYI	RGATCY	2 cut(s)	230, 378
Bsu15I	ATCGAT	1 cut(s)	2006
Bsu36I	CCTNAGG	1 cut(s)	896
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	6 cut(s)	522, 534, 1009, 1368, 1389, 2057
BsuTUI	ATCGAT	1 cut(s)	2006
BtgI	CCRYGG	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	811
BtsI	GCAGTG	5 cut(s)	739, 1637, 1737, 1763, 1960
BtsIMutI	CAGTG	8 cut(s)	188, 739, 864, 1220, 1637, 1737, 1763, 1960
BveI	ACCTGC	2 cut(s)	1255, 1973
Cac8I	GCNNGC	9 cut(s)	398, 532, 696, 730, 1358, 1691, 1951, 2051, 2055
CaiI	CAGNNNCTG	1 cut(s)	1178
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	3 cut(s)	796, 1831, 1960
Cfr10I	RCCGGY	2 cut(s)	92, 438
Cfr13I	GGNCC	3 cut(s)	533, 672, 1636
ClaI	ATCGAT	1 cut(s)	2006
Csp6I	GTAC	4 cut(s)	294, 1406, 1541, 1808
CspAI	ACCGGT	2 cut(s)	92, 438
CviQI	GTAC	4 cut(s)	294, 1406, 1541, 1808
DdeI	CTNAG	5 cut(s)	896, 1223, 1374, 1440, 1748
DpnI	GATC	6 cut(s)	5, 232, 380, 1992, 2005, 2009
DpnII	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
DrdI	GACNNNNNNGTC	1 cut(s)	1758
DseDI	GACNNNNNNGTC	1 cut(s)	1758
EaeI	YGGCCR	1 cut(s)	1007
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	1896
Eco47I	GGWCC	2 cut(s)	672, 1636
Eco57I	CTGAAG	4 cut(s)	849, 1140, 1499, 1926
Eco72I	CACGTG	2 cut(s)	1536, 1643
Eco81I	CCTNAGG	1 cut(s)	896
Eco88I	CYCGRG	1 cut(s)	234
EcoO109I	RGGNCCY	3 cut(s)	533, 672, 1636
EcoRI	GAATTC	1 cut(s)	708
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	1896
ErhI	CCWWGG	1 cut(s)	273
FalI	AAGNNNNNCTT	4 cut(s)	389, 421, 1010, 1042
FaqI	GGGAC	4 cut(s)	328, 494, 821, 1622
FriOI	GRGCYC	1 cut(s)	1896
FspBI	CTAG	5 cut(s)	729, 819, 1391, 1418, 1616
GlaI	GCGC	3 cut(s)	795, 1830, 1959
GsaI	CCCAGC	1 cut(s)	1509
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	6 cut(s)	522, 534, 1009, 1368, 1389, 2057
HapII	CCGG	3 cut(s)	93, 439, 1336
HhaI	GCGC	3 cut(s)	796, 1831, 1960
Hin6I	GCGC	3 cut(s)	794, 1829, 1958
HinP1I	GCGC	3 cut(s)	794, 1829, 1958
HindIII	AAGCTT	1 cut(s)	1358
HinfI	GANTC	7 cut(s)	332, 646, 833, 1488, 1585, 1646, 1901
HpaII	CCGG	3 cut(s)	93, 439, 1336
HphI	GGTGA	2 cut(s)	467, 1047
Hpy166II	GTNNAC	3 cut(s)	267, 1541, 1579
Hpy188I	TCNGA	6 cut(s)	707, 1323, 1531, 1751, 1870, 1906
Hpy188III	TCNNGA	9 cut(s)	122, 234, 777, 954, 1106, 1118, 1277, 1428, 1553
Hpy8I	GTNNAC	3 cut(s)	267, 1541, 1579
HpyAV	CCTTC	3 cut(s)	110, 1782, 1901
HpyCH4III	ACNGT	6 cut(s)	511, 1065, 1545, 1566, 1723, 2072
HpyCH4IV	ACGT	4 cut(s)	810, 912, 1535, 1642
HpyF3I	CTNAG	5 cut(s)	896, 1223, 1374, 1440, 1748
HpySE526I	ACGT	4 cut(s)	810, 912, 1535, 1642
HspAI	GCGC	3 cut(s)	794, 1829, 1958
KflI	GGGWCCC	1 cut(s)	1636
Kzo9I	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
LmnI	GCTCC	5 cut(s)	133, 256, 1430, 1930, 1976
MaeI	CTAG	5 cut(s)	729, 819, 1391, 1418, 1616
MaeII	ACGT	4 cut(s)	810, 912, 1535, 1642
MaeIII	GTNAC	2 cut(s)	685, 919
MalI	GATC	6 cut(s)	5, 232, 380, 1992, 2005, 2009
MboI	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
MboII	GAAGA	6 cut(s)	385, 570, 842, 1133, 1775, 2073
MflI	RGATCY	2 cut(s)	230, 378
MhlI	GDGCHC	5 cut(s)	12, 269, 1581, 1896, 2028
MlyI	GAGTC	2 cut(s)	341, 1579
MmeI	TCCRAC	1 cut(s)	1954
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	3 cut(s)	165, 1128, 1189
MslI	CAYNNNNRTG	4 cut(s)	272, 886, 1088, 1678
MspA1I	CMGCKG	1 cut(s)	1505
MspI	CCGG	3 cut(s)	93, 439, 1336
MspR9I	CCNGG	2 cut(s)	255, 1337
Mva1269I	GAATGC	2 cut(s)	627, 1265
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	796
NciI	CCSGG	1 cut(s)	1337
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
NheI	GCTAGC	1 cut(s)	728
NlaIV	GGNNCC	5 cut(s)	129, 1457, 1637, 1638, 1926
NmuCI	GTSAC	1 cut(s)	685
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	1 cut(s)	2044
PaeR7I	CTCGAG	1 cut(s)	234
PagI	TCATGA	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	1255
PceI	AGGCCT	1 cut(s)	522
PctI	GAATGC	2 cut(s)	627, 1265
PdmI	GAANNNNTTC	3 cut(s)	165, 1128, 1189
PfeI	GAWTC	5 cut(s)	646, 833, 1488, 1646, 1901
PinAI	ACCGGT	2 cut(s)	92, 438
PleI	GAGTC	2 cut(s)	340, 1579
PmaCI	CACGTG	2 cut(s)	1536, 1643
PmlI	CACGTG	2 cut(s)	1536, 1643
PpsI	GAGTC	2 cut(s)	340, 1579
Ppu21I	YACGTR	2 cut(s)	1536, 1643
PpuMI	RGGWCCY	2 cut(s)	672, 1636
PshAI	GACNNNNGTC	1 cut(s)	1113
PshBI	ATTAAT	1 cut(s)	1767
PsiI	TTATAA	1 cut(s)	156
Psp5II	RGGWCCY	2 cut(s)	672, 1636
Psp6I	CCWGG	1 cut(s)	253
PspCI	CACGTG	2 cut(s)	1536, 1643
PspFI	CCCAGC	1 cut(s)	1505
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	5 cut(s)	129, 1457, 1637, 1638, 1926
PspPI	GGNCC	3 cut(s)	533, 672, 1636
PspPPI	RGGWCCY	2 cut(s)	672, 1636
PstI	CTGCAG	3 cut(s)	766, 1758, 1984
PstNI	CAGNNNCTG	1 cut(s)	1178
PsuI	RGATCY	2 cut(s)	230, 378
PvuII	CAGCTG	1 cut(s)	1505
RsaI	GTAC	4 cut(s)	295, 1407, 1542, 1809
RsaNI	GTAC	4 cut(s)	294, 1406, 1541, 1808
RseI	CAYNNNNRTG	4 cut(s)	272, 886, 1088, 1678
Sau3AI	GATC	6 cut(s)	3, 230, 378, 1990, 2003, 2007
Sau96I	GGNCC	3 cut(s)	533, 672, 1636
SchI	GAGTC	2 cut(s)	341, 1579
ScrFI	CCNGG	2 cut(s)	255, 1337
SduI	GDGCHC	5 cut(s)	12, 269, 1581, 1896, 2028
SfcI	CTRYAG	3 cut(s)	762, 1754, 1980
Sfr274I	CTCGAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	672, 1636
SlaI	CTCGAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	4 cut(s)	272, 886, 1088, 1678
SmlI	CTYRAG	4 cut(s)	234, 1075, 1275, 1968
SmoI	CTYRAG	4 cut(s)	234, 1075, 1275, 1968
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	3 cut(s)	544, 796, 2014
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	5 cut(s)	729, 819, 1391, 1418, 1616
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	253, 1335
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	6 cut(s)	511, 1065, 1545, 1566, 1723, 2072
TaiI	ACGT	4 cut(s)	813, 915, 1538, 1645
TaqI	TCGA	5 cut(s)	6, 235, 423, 932, 2006
TatI	WGTACW	3 cut(s)	1405, 1540, 1807
TauI	GCSGC	1 cut(s)	2017
TfiI	GAWTC	5 cut(s)	646, 833, 1488, 1646, 1901
TscAI	CASTG	8 cut(s)	195, 739, 871, 1227, 1637, 1744, 1763, 1960
TseFI	GTSAC	1 cut(s)	685
Tsp45I	GTSAC	1 cut(s)	685
TspRI	CASTG	8 cut(s)	195, 739, 871, 1227, 1637, 1744, 1763, 1960
VneI	GTGCAC	2 cut(s)	265, 1577
VpaK11BI	GGWCC	2 cut(s)	672, 1636
VspI	ATTAAT	1 cut(s)	1767
XapI	RAATTY	3 cut(s)	14, 473, 708
XceI	RCATGY	1 cut(s)	2044
XhoI	CTCGAG	1 cut(s)	234
XmnI	GAANNNNTTC	3 cut(s)	165, 1128, 1189
XspI	CTAG	5 cut(s)	729, 819, 1391, 1418, 1616
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.