pycom07g23880

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
24664703 .. 24665783
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
ATGGTTGTGGCTTTGAAGCTCCTGAAGCAACTTCGAGCACCACACACCAACTCCACAATCCTTGACCGCAATCTTAGCCCACGAATCTTGAGCATTTGCAGAGCAATTTCTACCGTTCTGGCTCGACCGCCGCTAAACCCTAATTCTCCTTCCCTGTCATGTCTGAATCAGTACGAGCTCGACAAGTCCGCCGCCATTGCTGAAACCTGTGCTCAGGCAATAACCTGCTGGAAGCCAATACTGAGATCTATTGTTCCTTCTCTTTGTACTTCTCACTTCCAAATGAATCAGAAAAATATCAGGAAGGCCTGGAAGAAGGCAGGCCTTAATAATACCTTATCAAGTAAGTTTGCTCCATTGTTCCATGTCATACGACAGAATGCATACGCCAAACCAGGCCAAACGAAGAACATCACAAAGCGCAAAGGGAAAAAAAGTTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

149

Amino Acids

16.46

Weight (kDa)

10.5

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AciI CCGC 5 cut(s) 67, 128, 131, 189, 192
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 2 cut(s) 173, 268
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 2 cut(s) 308, 394
AluBI AGCT 2 cut(s) 19, 178
AluI AGCT 2 cut(s) 19, 178
Alw21I GWGCWC 3 cut(s) 40, 180, 214
AoxI GGCC 3 cut(s) 306, 322, 397
AspLEI GCGC 1 cut(s) 423
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 3 cut(s) 40, 180, 214
BciT130I CCWGG 2 cut(s) 310, 396
BfuAI ACCTGC 1 cut(s) 233
BglII AGATCT 1 cut(s) 245
BisI GCNGC 2 cut(s) 131, 192
BlsI GCNGC 2 cut(s) 132, 193
Bme1390I CCNGG 2 cut(s) 310, 396
BmrFI CCNGG 2 cut(s) 310, 396
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 310, 396
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 227, 233
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 308, 324, 399
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 3 cut(s) 40, 180, 214
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 3 cut(s) 308, 324, 399
Bsp1286I GDGCHC 3 cut(s) 40, 180, 214
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 5 cut(s) 67, 128, 131, 189, 192
BspANI GGCC 3 cut(s) 308, 324, 399
BspCNI CTCAG 2 cut(s) 226, 234
BspMI ACCTGC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 195
BssMI GATC 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 310, 396
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 74, 213, 242
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 3 cut(s) 25, 75, 197
BstNI CCWGG 2 cut(s) 310, 396
BstSCI CCNGG 2 cut(s) 308, 394
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 3 cut(s) 308, 324, 399
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 423
Csp6I GTAC 2 cut(s) 172, 267
CspCI CAANNNNNGTGG 4 cut(s) 43, 69, 78, 104
CviAII CATG 2 cut(s) 159, 365
CviJI RGCY 9 cut(s) 11, 19, 78, 122, 178, 235, 308, 324, 399
CviKI_1 RGCY 9 cut(s) 11, 19, 78, 122, 178, 235, 308, 324, 399
CviQI GTAC 2 cut(s) 172, 267
DdeI CTNAG 3 cut(s) 74, 213, 242
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 178
Eco147I AGGCCT 2 cut(s) 308, 324
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 308, 394
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 2 cut(s) 162, 368
FaiI YATR 4 cut(s) 160, 366, 371, 385
FatI CATG 2 cut(s) 158, 364
Fnu4HI GCNGC 2 cut(s) 131, 192
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 131, 192
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 131, 192
HaeIII GGCC 3 cut(s) 308, 324, 399
HhaI GCGC 1 cut(s) 423
Hin1II CATG 2 cut(s) 162, 368
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 3 cut(s) 84, 166, 286
Hpy188I TCNGA 2 cut(s) 165, 291
Hpy188III TCNNGA 3 cut(s) 22, 88, 301
HpyAV CCTTC 4 cut(s) 159, 267, 298, 310
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 99, 383, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 75, 197
HpyF3I CTNAG 3 cut(s) 74, 213, 242
Hsp92II CATG 2 cut(s) 162, 368
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 24, 358
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 2 cut(s) 325, 418
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 3 cut(s) 40, 180, 214
MluCI AATT 3 cut(s) 105, 142, 442
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 2 cut(s) 327, 445
MspR9I CCNGG 2 cut(s) 310, 396
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 2 cut(s) 310, 396
MwoI GCNNNNNNNGC 3 cut(s) 25, 75, 197
NdeII GATC 1 cut(s) 245
NlaIII CATG 2 cut(s) 162, 368
NsiI ATGCAT 1 cut(s) 385
PceI AGGCCT 2 cut(s) 308, 324
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 3 cut(s) 84, 166, 286
PkrI GCNGC 2 cut(s) 132, 193
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 308, 394
PspGI CCWGG 2 cut(s) 308, 394
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 173, 268
RsaNI GTAC 2 cut(s) 172, 267
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 327, 445
SatI GCNGC 2 cut(s) 131, 192
Sau3AI GATC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 310, 396
SduI GDGCHC 3 cut(s) 40, 180, 214
SetI ASST 5 cut(s) 21, 180, 209, 227, 338
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 3 cut(s) 105, 142, 442
SseBI AGGCCT 2 cut(s) 308, 324
SsiI CCGC 5 cut(s) 67, 128, 131, 189, 192
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 2 cut(s) 308, 324
StyD4I CCNGG 2 cut(s) 308, 394
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 3 cut(s) 34, 124, 180
TasI AATT 3 cut(s) 105, 142, 442
TatI WGTACW 1 cut(s) 266
TauI GCSGC 2 cut(s) 133, 194
TfiI GAWTC 3 cut(s) 84, 166, 286
Tru1I TTAA 2 cut(s) 327, 445
Tru9I TTAA 2 cut(s) 327, 445
TspDTI ATGAA 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.