pycom07g23940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
24746547 .. 24748547
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
ATGGCGTCGAATTCGAATTCGAATCCGTCGCTGCAGCCTGAGATCGGACCCGACGGCCTTGCTCGCCAGGCTTCTGTCATTACCTACACTGAGAAGATAATCGAGAACGAACAGCTTCAATTAAGAAAATATATTGAAGAAAACTATTCTAAAATTCGTGATGTCGAACGAGAGCTGGCACAGTTGTCAATGGAGATGAAACTCACAGCTGGGCCAAAAAAATCAGCTCTTGAACATTTGAGGAAGAAAATAGAGATGTCAACGGAGAAAATTCACGCTGCCAAGCTGAAGGAAGAACAAGCACGAAAGGTGTGGGAAGCAGCATTACAGGCTGTAAAGGACGAGGAAGCTATCAAGCAGCAGCTTTGTGAAGACTTAAACCAACTGGTGCAAGAAAGCAGCAGTTCTCAGTTTACGAGACTGGAGGAGTTAAAAAGACGACTTGAAGCTATGAACCCAAGCAGATCATCAGCTTCTGTTTCTCATGTAAGTTCTCTTTATATATATATGACGATTATATTTTGTAACATCATGTACAGGTTGGATGGCATTGCAGTCTTTGTTATTAGTTGGTGTAGATTTCATTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

198

Amino Acids

22.67

Weight (kDa)

6.91

Isoelectric Point (pI)

59.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 25 - 149 2.5e-10 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 10, 16, 153, 270
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 119, 137, 233, 446
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 9 cut(s) 115, 175, 209, 227, 286, 350, 364, 449, 473
AluI AGCT 9 cut(s) 115, 175, 209, 227, 286, 350, 364, 449, 473
Alw26I GTCTC 1 cut(s) 412
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 2 cut(s) 55, 212
ApeKI GCWGC 7 cut(s) 31, 34, 278, 320, 358, 361, 399
ApoI RAATTY 4 cut(s) 10, 16, 153, 270
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 47, 212
AsuII TTCGAA 2 cut(s) 14, 20
AvaII GGWCC 1 cut(s) 47
BarI GAAGNNNNNNTAC 2 cut(s) 309, 341
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 7 cut(s) 18, 46, 265, 332, 370, 373, 411
BccI CCATC 1 cut(s) 539
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 412
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 7 cut(s) 32, 35, 279, 321, 359, 362, 400
BlsI GCNGC 7 cut(s) 33, 36, 280, 322, 360, 363, 401
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 47, 212
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 443
Bpu14I TTCGAA 2 cut(s) 14, 20
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 390, 426
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 3 cut(s) 30, 81, 422
BseNI ACTGG 2 cut(s) 390, 426
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 7 cut(s) 18, 46, 265, 332, 370, 373, 411
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 57, 214
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 412
BsnI GGCC 2 cut(s) 57, 214
Bsp119I TTCGAA 2 cut(s) 14, 20
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 2 cut(s) 42, 464
BspANI GGCC 2 cut(s) 57, 214
BspCNI CTCAG 3 cut(s) 31, 82, 421
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 36
BspT104I TTCGAA 2 cut(s) 14, 20
BsrDI GCAATG 1 cut(s) 549
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 2 cut(s) 390, 426
BssMI GATC 2 cut(s) 42, 464
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 534
BstBI TTCGAA 2 cut(s) 14, 20
BstC8I GCNNGC 2 cut(s) 64, 177
BstDEI CTNAG 3 cut(s) 39, 90, 408
BstF5I GGATG 1 cut(s) 550
BstKTI GATC 2 cut(s) 45, 467
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 2 cut(s) 42, 464
BstMWI GCNNNNNNNGC 3 cut(s) 63, 68, 329
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 7 cut(s) 18, 46, 265, 332, 370, 373, 411
BstV2I GAAGAC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 57, 214
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 64, 177
CaiI CAGNNNCTG 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 47, 212
Csp6I GTAC 1 cut(s) 535
CviAII CATG 2 cut(s) 485, 532
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 3 cut(s) 39, 90, 408
DpnI GATC 2 cut(s) 44, 466
DpnII GATC 2 cut(s) 42, 464
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 308
EcoRI GAATTC 2 cut(s) 10, 16
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 488, 535
FatI CATG 2 cut(s) 484, 531
Fnu4HI GCNGC 7 cut(s) 32, 35, 279, 321, 359, 362, 400
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 7 cut(s) 32, 35, 279, 321, 359, 362, 400
GluI GCNGC 7 cut(s) 32, 35, 279, 321, 359, 362, 400
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 2 cut(s) 57, 214
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 488, 535
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 261, 414
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 103, 158, 230
Hpy8I GTNNAC 2 cut(s) 261, 414
Hpy99I CGWCG 3 cut(s) 10, 31, 56
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 34, 391, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 68, 329
HpyF3I CTNAG 3 cut(s) 39, 90, 408
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 488, 535
Kzo9I GATC 2 cut(s) 42, 464
LpnPI CCDG 9 cut(s) 51, 53, 80, 161, 195, 314, 371, 407, 523
Lsp1109I GCAGC 7 cut(s) 18, 46, 265, 332, 370, 373, 411
MaeIII GTNAC 1 cut(s) 524
MalI GATC 2 cut(s) 44, 466
MboI GATC 2 cut(s) 42, 464
MboII GAAGA 5 cut(s) 106, 149, 256, 305, 383
MluCI AATT 5 cut(s) 10, 16, 119, 153, 270
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 3 cut(s) 234, 337, 418
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 3 cut(s) 122, 377, 431
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 63, 68, 329
NdeII GATC 2 cut(s) 42, 464
NlaIII CATG 2 cut(s) 488, 535
NlaIV GGNNCC 1 cut(s) 49
NspV TTCGAA 2 cut(s) 14, 20
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 7 cut(s) 33, 36, 280, 322, 360, 363, 401
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 47, 212
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
SaqAI TTAA 3 cut(s) 122, 377, 431
SatI GCNGC 7 cut(s) 32, 35, 279, 321, 359, 362, 400
Sau3AI GATC 2 cut(s) 42, 464
Sau96I GGNCC 2 cut(s) 47, 212
ScrFI CCNGG 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 32
SfuI TTCGAA 2 cut(s) 14, 20
SinI GGWCC 1 cut(s) 47
Sse9I AATT 5 cut(s) 10, 16, 119, 153, 270
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 183
TaqI TCGA 5 cut(s) 8, 14, 20, 102, 165
TasI AATT 5 cut(s) 10, 16, 119, 153, 270
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 3 cut(s) 122, 377, 431
Tru9I TTAA 3 cut(s) 122, 377, 431
TscAI CASTG 1 cut(s) 94
TseI GCWGC 7 cut(s) 31, 34, 278, 320, 358, 361, 399
TspDTI ATGAA 3 cut(s) 212, 467, 572
TspGWI ACGGA 2 cut(s) 15, 278
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 4 cut(s) 10, 16, 153, 270
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.