pycom07g24200

High mobility group B protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
24945723 .. 24946047
325 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGTTCCAAGGACTACAGCTCCGTTCAGAAATTCACCGTCTCCCCCTACAGCGACGTCGTCGTGATCATGCTTTCTATGATATTGGGGATGTCTCAGCACCAGAAAGGCAGTGTACGGACAATTTATCTCAGATGTTACCAGACCTTGAAAATGCTCTTGTGGAGAAGAAGATGCCCAAAGAGAACTGGCTCTAA

Protein Analysis

65

Amino Acids

7.64

Weight (kDa)

6.72

Isoelectric Point (pI)

106.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 44, 97
ApoI RAATTY 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 26
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 44, 97
BfmI CTRYAG 2 cut(s) 14, 47
BmsI GCATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 108, 143
BseNI ACTGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 44, 97
BsmBI CGTCTC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 107, 142
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 94, 129
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 2 cut(s) 44, 97
BstMBI GATC 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 14, 47
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 68
CviJI RGCY 2 cut(s) 19, 190
CviKI_1 RGCY 2 cut(s) 19, 190
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 94, 129
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 71
FaiI YATR 2 cut(s) 69, 78
FatI CATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 64
FokI GGATG 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 1 cut(s) 71
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 28, 132
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 3 cut(s) 57, 60, 63
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 55
HpyF3I CTNAG 2 cut(s) 94, 129
HpySE526I ACGT 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 114, 153, 172
LweI GCATC 1 cut(s) 162
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 135
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 178, 181
MluCI AATT 2 cut(s) 30, 121
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 71
PflFI GACNNNGTC 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 57
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 64
SetI ASST 3 cut(s) 21, 58, 147
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 2 cut(s) 14, 47
SgeI CNNG 7 cut(s) 20, 74, 80, 113, 152, 158, 170
Sse9I AATT 2 cut(s) 30, 121
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 58
TasI AATT 2 cut(s) 30, 121
TscAI CASTG 1 cut(s) 116
TspGWI ACGGA 2 cut(s) 11, 131
TspRI CASTG 1 cut(s) 116
Tth111I GACNNNGTC 1 cut(s) 57
XapI RAATTY 1 cut(s) 30
ZraI GACGTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.