Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24947774 .. 24949061

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTACGATTCCAAGCTCTGCTCCCTCCTCGACGAGTATGGCCAGGTCCTCATTGTCGCCGCCGACAACGTCGGCTCCAAGCAGCTCCAGAACATTCTCAAGGGGCTGCGCGGAGACTCCGTCATTTTGAAGGGGAAGAACACGATGATGAAAAGGTCTGTCAAGATGCATGCGGAGAAGACGGGCAACAGTGCCTACCTCAACTTGTCCCCCTATGTGGGCAACATCGATTTGATTTTCACAAAAGGTGATTTGAAGGAAGTCAGCGAAGAGGTTGGCAAGTACAAGGCTGGAGCCCCCGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTGGTTCCTCCTGGTAACACTGGTCTTGACCCATCTCAGACCTCTTTCTTCCAGGTGCTCAACATCCCCACCAAGATTAACAAGGTACTGTTGAAATCATTACCCCTGTTGAACTTATCAAGAAGGGAGATAAGGTTGGCTCTTCTGAGGTTGCCCTCCTTGCCTAGCTTGGAATCAGGCTATTCTCATATGGTCTTGTTGTCCAGGTGGTGTATGACAATGGTTCCATCTTCAGCCCATAGGTGCTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

196

Amino Acids

21.35

Weight (kDa)

9.56

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	5 - 95	4.2e-10	Ribosomal protein L10
RL10P_insert	PF17777	101 - 139	3.5e-09	Insertion domain in 60S ribosomal protein L10P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	302
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	60, 111, 173, 300
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	3 cut(s)	5, 284, 420
AfiI	CCNNNNNNNGG	2 cut(s)	217, 218
AgsI	TTSAA	4 cut(s)	130, 256, 427, 445
AjnI	CCWGG	4 cut(s)	42, 343, 384, 536
AluBI	AGCT	3 cut(s)	16, 85, 501
AluI	AGCT	3 cut(s)	16, 85, 501
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	82, 106
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	93, 94
BccI	CCATC	2 cut(s)	373, 568
BciT130I	CCWGG	4 cut(s)	44, 345, 386, 538
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	498
BisI	GCNGC	3 cut(s)	60, 83, 107
BlsI	GCNGC	3 cut(s)	61, 84, 108
Bme1390I	CCNGG	4 cut(s)	44, 345, 386, 538
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	4 cut(s)	76, 295, 339, 558
BmrFI	CCNGG	4 cut(s)	44, 345, 386, 538
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	185
BpmI	CTGGAG	2 cut(s)	71, 312
BpuEI	CTTGAG	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	228
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 105, 135, 452, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 218
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	4 cut(s)	44, 345, 386, 538
BseCI	ATCGAT	1 cut(s)	228
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	217, 218
BseMII	CTCAG	2 cut(s)	383, 470
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	93, 94
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	217, 218
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	298, 393
Bsp143I	GATC	1 cut(s)	582
BspACI	CCGC	4 cut(s)	60, 111, 173, 300
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	382, 471
BspDI	ATCGAT	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	76, 295, 339, 558
BspQI	GCTCTTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	582
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	4 cut(s)	44, 345, 386, 538
Bst4CI	ACNGT	2 cut(s)	191, 423
Bst6I	CTCTTC	2 cut(s)	264, 480
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	369, 479
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	585
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	582
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	4 cut(s)	44, 345, 386, 538
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	4 cut(s)	42, 343, 384, 536
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	93, 94
BstV2I	GAAGAC	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	196, 351
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	4, 283, 419
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	1 cut(s)	170
CviQI	GTAC	3 cut(s)	4, 283, 419
DdeI	CTNAG	2 cut(s)	369, 479
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	264, 480
EarI	CTCTTC	2 cut(s)	264, 480
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	4 cut(s)	42, 343, 384, 536
EcoT22I	ATGCAT	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	1 cut(s)	173
FaiI	YATR	7 cut(s)	39, 171, 216, 522, 524, 548, 573
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	169
FauI	CCCGC	1 cut(s)	307
FauNDI	CATATG	1 cut(s)	522
Fnu4HI	GCNGC	3 cut(s)	60, 83, 107
FokI	GGATG	1 cut(s)	383
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	3 cut(s)	60, 83, 107
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	3 cut(s)	60, 83, 107
GsuI	CTGGAG	2 cut(s)	71, 312
HaeIII	GGCC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	8, 116, 506
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	372, 480, 587
Hpy188III	TCNNGA	4 cut(s)	88, 163, 359, 453
Hpy99I	CGWCG	2 cut(s)	35, 74
HpyAV	CCTTC	3 cut(s)	124, 250, 450
HpyCH4III	ACNGT	2 cut(s)	191, 423
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	2 cut(s)	369, 479
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	582
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	5 cut(s)	26, 80, 90, 293, 325
Lsp1109I	GCAGC	2 cut(s)	93, 94
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	584
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	1 cut(s)	582
MboII	GAAGA	6 cut(s)	148, 190, 281, 373, 467, 555
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	298, 393
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	1 cut(s)	324
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	9 cut(s)	35, 38, 59, 209, 265, 351, 385, 474, 499
Mox20I	TGGCCA	1 cut(s)	42
Mph1103I	ATGCAT	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	42
MspR9I	CCNGG	4 cut(s)	44, 345, 386, 538
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	4 cut(s)	44, 345, 386, 538
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	1 cut(s)	582
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	4 cut(s)	76, 295, 339, 558
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	173
PaeI	GCATGC	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	8, 506
PflFI	GACNNNGTC	2 cut(s)	68, 119
PkrI	GCNGC	3 cut(s)	61, 84, 108
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	4 cut(s)	42, 343, 384, 536
PspGI	CCWGG	4 cut(s)	42, 343, 384, 536
PspN4I	GGNNCC	4 cut(s)	76, 295, 339, 558
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PsyI	GACNNNGTC	2 cut(s)	68, 119
RsaI	GTAC	3 cut(s)	5, 284, 420
RsaNI	GTAC	3 cut(s)	4, 283, 419
RseI	CAYNNNNRTG	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	60, 83, 107
Sau3AI	GATC	1 cut(s)	582
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	4 cut(s)	44, 345, 386, 538
SduI	GDGCHC	2 cut(s)	298, 393
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SphI	GCATGC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	4 cut(s)	60, 111, 173, 300
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	4 cut(s)	42, 343, 384, 536
TaaI	ACNGT	2 cut(s)	191, 423
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	30, 228
TasI	AATT	1 cut(s)	324
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	8, 506
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	196, 358
TseI	GCWGC	2 cut(s)	82, 106
TspDTI	ATGAA	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	196, 358
Tth111I	GACNNNGTC	2 cut(s)	68, 119
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.