pycom07g24310

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
25045176 .. 25045504
329 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGACCAATTTGGCCAGCGAGTATGCACCGTTGATCAAGTCCACGGACGGCCAGCACGCTTTATGGGAATGTTATTTGCATGAACAAGGCAGCTGGGTTAATTACCATGTGGGTGATTTTGTTGTCGACAAGCCTAAAATGCCAATCAAGATCAAATTTTCGAAGGTCCAGGTTGATTGTACACACACCAAAGGTGGTCTCTGCTTGGACTCGGTGTTAATAACCCCTAACAAGTCGAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

82

Amino Acids

9.15

Weight (kDa)

6.89

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 29 - 76 2.8e-09 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AcoI YGGCCR 2 cut(s) 12, 49
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 203
AoxI GGCC 2 cut(s) 12, 49
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 14
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 203
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 14, 51
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 2 cut(s) 14, 51
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 161
Bsp1407I TGTACA 1 cut(s) 179
Bsp143I GATC 2 cut(s) 33, 150
BspANI GGCC 2 cut(s) 14, 51
BspT104I TTCGAA 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 2 cut(s) 33, 150
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 3 cut(s) 16, 53, 57
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 2 cut(s) 36, 153
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 33, 150
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 2 cut(s) 14, 51
BtgI CCRYGG 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 16, 53, 57
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 180
CviAII CATG 2 cut(s) 80, 107
CviJI RGCY 4 cut(s) 14, 51, 93, 133
CviKI_1 RGCY 4 cut(s) 14, 51, 93, 133
CviQI GTAC 1 cut(s) 180
DpnI GATC 2 cut(s) 35, 152
DpnII GATC 2 cut(s) 33, 150
EaeI YGGCCR 2 cut(s) 12, 49
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 83, 110
FaiI YATR 4 cut(s) 24, 64, 81, 108
FatI CATG 2 cut(s) 79, 106
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 2 cut(s) 14, 51
Hin1II CATG 2 cut(s) 83, 110
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 209
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 42, 127, 182
Hpy188III TCNNGA 2 cut(s) 148, 237
Hpy8I GTNNAC 3 cut(s) 42, 127, 182
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 26, 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
Hsp92II CATG 2 cut(s) 83, 110
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 2 cut(s) 33, 150
LpnPI CCDG 5 cut(s) 28, 65, 79, 155, 182
Lsp1109I GCAGC 1 cut(s) 102
MalI GATC 2 cut(s) 35, 152
MboI GATC 2 cut(s) 33, 150
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 3 cut(s) 7, 100, 155
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 1 cut(s) 203
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
MseI TTAA 2 cut(s) 99, 218
MslI CAYNNNNRTG 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 2 cut(s) 33, 150
NlaIII CATG 2 cut(s) 83, 110
NspV TTCGAA 1 cut(s) 161
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 93
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 111
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 99, 218
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 2 cut(s) 33, 150
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 170
SetI ASST 4 cut(s) 95, 168, 174, 196
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 3 cut(s) 7, 100, 155
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 126, 161, 236
TasI AATT 3 cut(s) 7, 100, 155
TatI WGTACW 1 cut(s) 179
Tru1I TTAA 2 cut(s) 99, 218
Tru9I TTAA 2 cut(s) 99, 218
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.