pycom07g24710

isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
25321180 .. 25322124
945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGCATGACCCACCCAAATTCAGACCCAAACCCAACCCATGTCCAAGCCCACTTGAACCTCACATTTTCAACCTTTATAAAAAGGGTAAAGCCACAAAATCACAAAATCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCTTTTTGTTTGTGTTCTTCCATTCCTCCTCTCTCAGCAATATGGCTCAGAAGGCGGTCCTGAAGGTCCTGACCATGACTGATGACAAAACAAAGCAGAAAGCCATTGAAGCTGTCGCTGATATTTTTGGGATTGATTCAATCGCGGCAGATCTAAAGGACCAGAAGCTGACAGTTGTAGGAATGATGGATCCAGTGGCTGTAGTGAAGAAGTTGAAGAAGGTCGGGAAAGTAGACATAATATCTATCGGACCAGCCAAGGAAGAGAAGAAAGAAGAAAAGAAAGAGGAAAAGAAGGAGGAGAAGAAAGAGGAAAAGAAGGAGGAGAAAAAAGAAGAAAAGAAGGAGGACAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.52

Weight (kDa)

9.4

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AccI GTMKAC 1 cut(s) 369
AccII CGCG 1 cut(s) 281
AciI CCGC 2 cut(s) 191, 281
AclWI GGATC 2 cut(s) 320, 333
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 218
AgsI TTSAA 5 cut(s) 56, 70, 245, 276, 352
AluBI AGCT 2 cut(s) 248, 304
AluI AGCT 2 cut(s) 248, 304
AlwI GGATC 2 cut(s) 320, 333
AlwNI CAGNNNCTG 2 cut(s) 304, 335
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 193, 202, 295, 386
AvaII GGWCC 4 cut(s) 193, 202, 295, 386
BamHI GGATCC 1 cut(s) 325
BccI CCATC 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 336
BglII AGATCT 1 cut(s) 286
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme18I GGWCC 4 cut(s) 193, 202, 295, 386
BmgT120I GGNCC 4 cut(s) 193, 202, 295, 386
BmiI GGNNCC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 184, 197
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 3 cut(s) 154, 449, 473
Bsh1236I CGCG 1 cut(s) 281
Bsp143I GATC 2 cut(s) 286, 325
BspACI CCGC 2 cut(s) 191, 281
BspCNI CTCAG 2 cut(s) 183, 196
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 2 cut(s) 320, 333
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 2 cut(s) 286, 325
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 170, 183
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 2 cut(s) 289, 328
BstMBI GATC 2 cut(s) 286, 325
BstMWI GCNNNNNNNGC 2 cut(s) 188, 245
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 281
BstX2I RGATCY 2 cut(s) 286, 325
BstYI RGATCY 2 cut(s) 286, 325
BtsIMutI CAGTG 1 cut(s) 336
CaiI CAGNNNCTG 2 cut(s) 304, 335
Cfr13I GGNCC 4 cut(s) 193, 202, 295, 386
CviAII CATG 3 cut(s) 5, 39, 211
CviJI RGCY 8 cut(s) 48, 92, 182, 239, 248, 304, 335, 392
CviKI_1 RGCY 8 cut(s) 48, 92, 182, 239, 248, 304, 335, 392
DdeI CTNAG 2 cut(s) 170, 183
DpnI GATC 2 cut(s) 288, 327
DpnII GATC 2 cut(s) 286, 325
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 4 cut(s) 193, 202, 295, 386
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 3 cut(s) 8, 42, 214
FaiI YATR 6 cut(s) 6, 40, 78, 179, 212, 374
FatI CATG 3 cut(s) 4, 38, 210
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 8, 42, 214
HinfI GANTC 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 23, 186, 386
Hpy188III TCNNGA 3 cut(s) 196, 205, 361
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 6 cut(s) 181, 193, 349, 424, 448, 472
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 245
HpyF3I CTNAG 2 cut(s) 170, 183
Hsp92II CATG 3 cut(s) 8, 42, 214
Kzo9I GATC 2 cut(s) 286, 325
LpnPI CCDG 5 cut(s) 209, 218, 311, 342, 402
MalI GATC 2 cut(s) 288, 327
MboI GATC 2 cut(s) 286, 325
MboII GAAGA 8 cut(s) 145, 355, 364, 410, 415, 422, 451, 482
MflI RGATCY 2 cut(s) 286, 325
MluCI AATT 1 cut(s) 17
MnlI CCTC 8 cut(s) 69, 172, 175, 415, 427, 439, 451, 475
Mph1103I ATGCAT 1 cut(s) 6
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 188, 245
NdeII GATC 2 cut(s) 286, 325
NlaIII CATG 3 cut(s) 8, 42, 214
NlaIV GGNNCC 1 cut(s) 327
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 202
PsiI TTATAA 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 4 cut(s) 193, 202, 295, 386
PspPPI RGGWCCY 1 cut(s) 202
PstNI CAGNNNCTG 2 cut(s) 304, 335
PsuI RGATCY 2 cut(s) 286, 325
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 2 cut(s) 286, 325
Sau96I GGNCC 4 cut(s) 193, 202, 295, 386
SetI ASST 6 cut(s) 61, 75, 204, 250, 306, 360
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 4 cut(s) 193, 202, 295, 386
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 191, 281
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 310
TasI AATT 1 cut(s) 17
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 1 cut(s) 336
TspRI CASTG 1 cut(s) 336
VpaK11BI GGWCC 4 cut(s) 193, 202, 295, 386
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.