Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25713764 .. 25714174

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGATTTGCTTGTCATCTTCATAGCTCTATTCACAGTTATCACTCTAATCACTCTATTCACAGTTATTACTGTCGACGAAAACCCTCCAAATCCAACTTTCGTTTCCCCAATCCCATTGTTTCCAAAACCACACACAAAGTTTATTGTAATTCGTCCCTGGAGCAGAGGCTGCTCTCGCTAAACATGTCTGAGATTGAGATGAACAGCGGGAAGCTGCAGCAGCACGGGCGTGTGATTTCCGATCAGTTGTCATGCAATAAGGCTAGTGGGAGAATCCGAAATGGTAATGTGATGGAGTTGGGACCGGTTTCTGTGCGCTCGCAAATGGTTAAGGACGTGTGGGGGGCAACAAGTTTAGTCTCAAGGAGCTTGAGGTTGCCGCGAATGGACATTCCAAACAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.44

Weight (kDa)

10.16

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	1 cut(s)	385
AciI	CCGC	2 cut(s)	210, 383
AflIII	ACRYGT	2 cut(s)	186, 339
AgeI	ACCGGT	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	27, 217, 372
AluI	AGCT	3 cut(s)	27, 217, 372
Alw26I	GTCTC	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	172
ApeKI	GCWGC	4 cut(s)	172, 217, 220, 223
AsiGI	ACCGGT	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	159, 204, 232, 235
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	218
BisI	GCNGC	5 cut(s)	173, 218, 221, 224, 383
BlsI	GCNGC	5 cut(s)	174, 219, 222, 225, 384
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	349, 394
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	159, 204, 232, 235
Bsh1236I	CGCG	1 cut(s)	385
BshTI	ACCGGT	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	142, 318
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	142, 318
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	210, 383
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	38, 65, 74
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 178, 223, 229
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	4 cut(s)	159, 204, 232, 235
BtrI	CACGTC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	323
CaiI	CAGNNNCTG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	305
CspAI	ACCGGT	1 cut(s)	307
CviAII	CATG	2 cut(s)	187, 255
CviJI	RGCY	5 cut(s)	27, 172, 217, 266, 372
CviKI_1	RGCY	5 cut(s)	27, 172, 217, 266, 372
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	190, 258
FaiI	YATR	3 cut(s)	24, 188, 256
FaqI	GGGAC	2 cut(s)	142, 318
FatI	CATG	2 cut(s)	186, 254
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	5 cut(s)	173, 218, 221, 224, 383
Fsp4HI	GCNGC	5 cut(s)	173, 218, 221, 224, 383
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	5 cut(s)	173, 218, 221, 224, 383
GsuI	CTGGAG	1 cut(s)	182
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	190, 258
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	4 cut(s)	193, 244, 281, 410
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	81
HpyCH4III	ACNGT	3 cut(s)	38, 65, 74
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	220, 258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 178, 223, 229
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	190, 258
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	163, 369
LpnPI	CCDG	3 cut(s)	146, 173, 321
Lsp1109I	GCAGC	4 cut(s)	159, 204, 232, 235
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	339
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	11
MluCI	AATT	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	97, 162, 369
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	4 cut(s)	172, 178, 223, 229
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	190, 258
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	231
PciI	ACATGT	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	174, 219, 222, 225, 384
PscI	ACATGT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	5 cut(s)	173, 218, 221, 224, 383
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	5 cut(s)	29, 219, 342, 374, 380
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	364, 373
SmoI	CTYRAG	2 cut(s)	364, 373
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	210, 383
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	38, 65, 74
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	151
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	4 cut(s)	172, 217, 220, 223
TspDTI	ATGAA	2 cut(s)	11, 218
VpaK11BI	GGWCC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.