Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25810657 .. 25811307

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGGCGGCAGCTATAGTTTTATATCCATCACCACCAATTGGCCACTTGATCGCCATGGTAGAGCTAGGCAAGCTCATACTCACCCGCCAACCTTCTCTGTGCATTCACATCCTCATCACCACCCCGCCCTACCGCGCCGACGACACCGCCTCATACATCACCTCCGTCTCCGCCGCCACCCCTTCCCTCATCTTCCACCACCTCCCCACCATCTCCCTCCCTCCCTCCCTCACCTCCTCCCGCAACCACGAAACCCTAACCTTCGAACTCGTCCCCCTCAACAACCCTTACGTCCACCAAGCCCTCCTCTCCATCTCCCACAGCTTCTCCATCAAAGCTTTTGTCATGGACTTCTTCTGCGCTCTCGGGCTCTCCGTCGCCACCGAGCTGAACATCCCCAGCTTCTTCTTCTTCACATCCGGCGCTGCCTTCCTCGCCAGCTTCCTCTACCTCCCCACCATTCACAACATCACTGACAAAAGCCTCAAAGACCTAAATACCCTTCTCAACATTCCAGGAGTCCCGCCGATGCCTTCCTCCGATATGGCGAAACCGACTCTTGACCGAAGCGACAAGGCGTACGAACATTTCCTAGCAAGCTCAAGCCAGTTCCCCAAATCAGCTGGGATCGATCGTAAACACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

217

Amino Acids

23.59

Weight (kDa)

6.53

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccII	CGCG	1 cut(s)	138
AciI	CCGC	9 cut(s)	8, 88, 128, 136, 150, 174, 177, 244, 527
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	1 cut(s)	43
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	643
AjnI	CCWGG	1 cut(s)	517
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	11, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AspLEI	GCGC	3 cut(s)	140, 365, 428
AsuHPI	GGTGA	5 cut(s)	24, 76, 112, 154, 226
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	23, 415
BccI	CCATC	4 cut(s)	37, 221, 323, 341
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	68, 596
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	4 cut(s)	9, 12, 177, 429
BlsI	GCNGC	4 cut(s)	10, 13, 178, 430
Bme1390I	CCNGG	1 cut(s)	519
BmeT110I	CYCGRG	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	589
Bsa29I	ATCGAT	1 cut(s)	633
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	111, 396, 419
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	2 cut(s)	229, 299
BseXI	GCAGC	2 cut(s)	23, 415
BseYI	CCCAGC	2 cut(s)	401, 626
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	633
BsiEI	CGRYCG	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	423
BsiWI	CGTACG	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	260, 509
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	260, 509
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	51, 630, 634
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	9 cut(s)	8, 88, 128, 136, 150, 174, 177, 244, 527
BspANI	GGCC	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	633
BspFNI	CGCG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	638
BspT104I	TTCGAA	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	51, 630, 634
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	74, 442, 601
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	111, 396, 419
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	3 cut(s)	140, 365, 428
BstKTI	GATC	3 cut(s)	54, 633, 637
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	3 cut(s)	51, 630, 634
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 437
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	23, 415
Bsu15I	ATCGAT	1 cut(s)	633
BsuRI	GGCC	1 cut(s)	45
BsuTUI	ATCGAT	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	111, 396, 419
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	3 cut(s)	74, 442, 601
CfoI	GCGC	3 cut(s)	140, 365, 428
ClaI	ATCGAT	1 cut(s)	633
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	2 cut(s)	58, 349
CviQI	GTAC	1 cut(s)	583
DpnI	GATC	3 cut(s)	53, 632, 636
DpnII	GATC	3 cut(s)	51, 630, 634
EaeI	YGGCCR	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	2 cut(s)	61, 352
FaiI	YATR	7 cut(s)	17, 25, 59, 80, 157, 350, 548
FaqI	GGGAC	2 cut(s)	260, 509
FatI	CATG	2 cut(s)	57, 348
FauI	CCCGC	4 cut(s)	95, 135, 251, 534
Fnu4HI	GCNGC	4 cut(s)	9, 12, 177, 429
FokI	GGATG	3 cut(s)	98, 383, 406
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	9, 12, 177, 429
FspBI	CTAG	2 cut(s)	68, 596
GlaI	GCGC	3 cut(s)	139, 364, 427
GluI	GCNGC	4 cut(s)	9, 12, 177, 429
GsaI	CCCAGC	2 cut(s)	405, 630
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	423
HhaI	GCGC	3 cut(s)	140, 365, 428
Hin1II	CATG	2 cut(s)	61, 352
Hin6I	GCGC	3 cut(s)	138, 363, 426
HinP1I	GCGC	3 cut(s)	138, 363, 426
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	2 cut(s)	522, 559
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	5 cut(s)	24, 76, 112, 154, 226
Hpy166II	GTNNAC	2 cut(s)	298, 641
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	2 cut(s)	298, 641
Hpy99I	CGWCG	2 cut(s)	146, 383
HpyAV	CCTTC	6 cut(s)	105, 195, 274, 442, 515, 546
HpyCH4IV	ACGT	2 cut(s)	294, 645
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 437
HpySE526I	ACGT	2 cut(s)	294, 645
Hsp92II	CATG	2 cut(s)	61, 352
HspAI	GCGC	3 cut(s)	138, 363, 426
Kzo9I	GATC	3 cut(s)	51, 630, 634
LpnPI	CCDG	7 cut(s)	415, 436, 454, 504, 531, 612, 623
Lsp1109I	GCAGC	2 cut(s)	23, 415
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	68, 596
MaeII	ACGT	2 cut(s)	294, 645
MalI	GATC	3 cut(s)	53, 632, 636
MboI	GATC	3 cut(s)	51, 630, 634
MboII	GAAGA	5 cut(s)	187, 349, 400, 403, 406
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	531, 553
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	73, 437
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	51, 630, 634
NlaIII	CATG	2 cut(s)	61, 352
NspV	TTCGAA	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	1 cut(s)	105
Pfl23II	CGTACG	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	4 cut(s)	10, 13, 178, 430
Ple19I	CGATCG	1 cut(s)	637
PleI	GAGTC	2 cut(s)	530, 553
PpsI	GAGTC	2 cut(s)	530, 553
Psp6I	CCWGG	1 cut(s)	517
PspFI	CCCAGC	2 cut(s)	401, 626
PspGI	CCWGG	1 cut(s)	517
PspLI	CGTACG	1 cut(s)	582
PvuI	CGATCG	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SatI	GCNGC	4 cut(s)	9, 12, 177, 429
Sau3AI	GATC	3 cut(s)	51, 630, 634
SchI	GAGTC	2 cut(s)	531, 553
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	9 cut(s)	8, 88, 128, 136, 150, 174, 177, 244, 527
SspMI	CTAG	2 cut(s)	68, 596
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	2 cut(s)	297, 648
TaqI	TCGA	2 cut(s)	267, 633
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	1 cut(s)	39
TauI	GCSGC	2 cut(s)	11, 179
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	2 cut(s)	11, 428
TspGWI	ACGGA	2 cut(s)	157, 367
TspRI	CASTG	1 cut(s)	481
Van91I	CCANNNNNTGG	1 cut(s)	41
XspI	CTAG	2 cut(s)	68, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.