Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26347370 .. 26350039

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTGGCGAGCACTGGCGGTTCCGTCGTTCAGCTCCGAACCAAACCGTCGCTCATGCCTTCCTGCTCTGCTCCCCGGAAATCTAGCAAGGCTCTCCCGAAGAAGTTCTTCGGGACCAGATTGAGGGCATCCGGATCCGAGAGGCTCCATTTGTGGCGCTCCGATGGTCCCGGTCGCTCGCCGAAGCTCCGAGTCGTCGTACGCAACATGCTCTCCGCCGTTCCAGAGAAGCGCCTAGGGCTATACGACCCGTCGTTCGATAAGGACTCGTGTGGTGTCGGCTTCGTCGCCGAATTGTCCGGCGAAGGCAGCCGCAAAACGATTGCGGATGCAATTGAAATGCTGGTGCGGATGGCGCACAGAGGAGCGTGTGGGTGTGAAACGAATACCGGTGATGGAGCTGGGATTCTCGTCGGTGTTCCTCACGACTTCTACAAGGAGGTAACCAAAGATGCCGGGTTTGATCTTCCACCGGCAGGGGAGTACGCTGTTGGAATGTTCTTCTTGCCCACATCTGAGAGCCGAAGAGAAGAAAGCAAAAGAGTATTTGCAAAGGTTGCAGAGTCCCTTGGACACACTGTTCTGGGGTGGCGATCTGTTCCAACAGATAACTCGGACTTGGGGAATTCTGCTTTGCAGACTGAACCTGTTATTGAGCAAGTGTTCCTTACTGCGACTCCAAAGTCAAAACTTGACATCGAACGACAGATGTACATACTAAGAAGGCTGTCAATGGTTGCTATCCAAGCTGCATTAAACCTTGAACATGGTGGTGCTAAAGACTTTTATATATGTTCGCTGTCATCAAGGACTGTTGTTTACAAAGGTCAGCTGAAGCCCGTTCAGCTGAAGGGTTATTATTATGCAGATCTAGGCAATGAAAGGATTTTAAACTGTACTTGCTGCAGTACACTCTCGATTCTCAACAAATACCTTTCCCAGCTGGGATCGTGCTCAGCCTATGCGTGTCATTGGCCACAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015930 GO:0016040 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019676 GO:0019740 GO:0019752 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045181 GO:0046394 GO:0046686 GO:0048589 GO:0050896 GO:0055114 GO:0060359 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00250 ko00910 ko01100 ko01110 ko01120 ko01130 ko01230 map00250 map00910 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Fer4_20 GATase_2 GXGXG Glu_syn_central Glu_synthase Pyr_redox_2

Protein Analysis

329

Amino Acids

35.9

Weight (kDa)

9.17

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_2	PF00310	91 - 296	3.5e-68	Glutamine amidotransferases class-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	682
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	5 cut(s)	18, 216, 313, 326, 349
AclWI	GGATC	3 cut(s)	129, 142, 955
AcoI	YGGCCR	1 cut(s)	974
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	2 cut(s)	854, 869
AfaI	GTAC	5 cut(s)	201, 485, 713, 898, 910
AfiI	CCNNNNNNNGG	2 cut(s)	123, 476
AgeI	ACCGGT	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	338, 764
AleI	CACNNNNGTG	1 cut(s)	982
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	7 cut(s)	34, 187, 401, 749, 832, 847, 943
AluI	AGCT	7 cut(s)	34, 187, 401, 749, 832, 847, 943
Alw21I	GWGCWC	2 cut(s)	14, 956
AlwI	GGATC	3 cut(s)	129, 142, 955
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	974
ApeKI	GCWGC	3 cut(s)	309, 749, 903
ApoI	RAATTY	1 cut(s)	625
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AsiGI	ACCGGT	1 cut(s)	389
Asp700I	GAANNNNTTC	2 cut(s)	104, 107
AspA2I	CCTAGG	1 cut(s)	235
AspLEI	GCGC	3 cut(s)	159, 234, 358
AspS9I	GGNCC	2 cut(s)	114, 167
AsuC2I	CCSGG	3 cut(s)	76, 171, 457
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	114, 167
AvrII	CCTAGG	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	976
BamHI	GGATCC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	268
Bbv12I	GWGCWC	2 cut(s)	14, 956
BbvI	GCAGC	3 cut(s)	321, 736, 890
BccI	CCATC	3 cut(s)	158, 346, 389
BceAI	ACGGC	1 cut(s)	203
BcnI	CCSGG	3 cut(s)	76, 171, 457
BfaI	CTAG	3 cut(s)	84, 236, 872
BfmI	CTRYAG	1 cut(s)	904
BfoI	RGCGCY	2 cut(s)	160, 235
BglII	AGATCT	1 cut(s)	868
BisI	GCNGC	4 cut(s)	310, 313, 750, 904
BlnI	CCTAGG	1 cut(s)	235
BlpI	GCTNAGC	1 cut(s)	955
BlsI	GCNGC	4 cut(s)	311, 314, 751, 905
Bme1390I	CCNGG	3 cut(s)	76, 171, 457
Bme18I	GGWCC	2 cut(s)	114, 167
BmgT120I	GGNCC	2 cut(s)	114, 167
BmiI	GGNNCC	5 cut(s)	22, 115, 136, 146, 169
BmrFI	CCNGG	3 cut(s)	76, 171, 457
BmsI	GCATC	3 cut(s)	137, 319, 442
Bpu1102I	GCTNAGC	1 cut(s)	955
BpuMI	CCSGG	3 cut(s)	76, 171, 457
BsaJI	CCNNGG	3 cut(s)	74, 235, 568
BsaWI	WCCGGW	2 cut(s)	131, 389
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 661, 691
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 476
Bse118I	RCCGGY	2 cut(s)	389, 472
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	883
BseAI	TCCGGA	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	74, 235, 568
BseGI	GGATG	3 cut(s)	128, 334, 357
BseLI	CCNNNNNNNGG	2 cut(s)	123, 476
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	2 cut(s)	507, 969
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	321, 736, 890
BseYI	CCCAGC	3 cut(s)	401, 939, 943
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	976
BshTI	ACCGGT	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	14, 956
BsiSI	CCGG	7 cut(s)	76, 132, 171, 300, 390, 456, 473
BsiWI	CGTACG	1 cut(s)	199
BslFI	GGGAC	3 cut(s)	127, 153, 550
BslI	CCNNNNNNNGG	2 cut(s)	123, 476
BsmFI	GGGAC	3 cut(s)	127, 153, 550
BsnI	GGCC	1 cut(s)	976
Bsp1286I	GDGCHC	2 cut(s)	14, 956
Bsp13I	TCCGGA	1 cut(s)	131
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	5 cut(s)	134, 463, 593, 868, 947
Bsp1720I	GCTNAGC	1 cut(s)	955
BspACI	CCGC	5 cut(s)	18, 216, 313, 326, 349
BspANI	GGCC	1 cut(s)	976
BspCNI	CTCAG	2 cut(s)	508, 968
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	5 cut(s)	22, 115, 136, 146, 169
BspMAI	CTGCAG	1 cut(s)	908
BspPI	GGATC	3 cut(s)	129, 142, 955
BsrDI	GCAATG	1 cut(s)	883
BsrFI	RCCGGY	2 cut(s)	389, 472
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	2 cut(s)	389, 472
BssECI	CCNNGG	3 cut(s)	74, 235, 568
BssMI	GATC	5 cut(s)	134, 463, 593, 868, 947
BssSI	CACGAG	1 cut(s)	268
BssT1I	CCWWGG	2 cut(s)	235, 568
Bst2BI	CACGAG	1 cut(s)	268
Bst4CI	ACNGT	4 cut(s)	48, 580, 814, 896
Bst6I	CTCTTC	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	10, 179
BstDEI	CTNAG	3 cut(s)	516, 719, 955
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	128, 334, 357
BstH2I	RGCGCY	2 cut(s)	160, 235
BstHHI	GCGC	3 cut(s)	159, 234, 358
BstKTI	GATC	5 cut(s)	137, 466, 596, 871, 950
BstMBI	GATC	5 cut(s)	134, 463, 593, 868, 947
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	6 cut(s)	238, 309, 355, 557, 746, 844
BstNSI	RCATGY	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	3 cut(s)	74, 169, 455
BstSFI	CTRYAG	1 cut(s)	904
BstV1I	GCAGC	3 cut(s)	321, 736, 890
BstX2I	RGATCY	2 cut(s)	134, 868
BstYI	RGATCY	2 cut(s)	134, 868
BsuRI	GGCC	1 cut(s)	976
BtsCI	GGATG	3 cut(s)	128, 334, 357
BtsIMutI	CAGTG	2 cut(s)	12, 576
Cac8I	GCNNGC	2 cut(s)	10, 179
CfoI	GCGC	3 cut(s)	159, 234, 358
Cfr10I	RCCGGY	2 cut(s)	389, 472
Cfr13I	GGNCC	2 cut(s)	114, 167
Csp6I	GTAC	5 cut(s)	200, 484, 712, 897, 909
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	3 cut(s)	55, 208, 767
CviQI	GTAC	5 cut(s)	200, 484, 712, 897, 909
DdeI	CTNAG	3 cut(s)	516, 719, 955
DpnI	GATC	5 cut(s)	136, 465, 595, 870, 949
DpnII	GATC	5 cut(s)	134, 463, 593, 868, 947
DraI	TTTAAA	1 cut(s)	891
DrdI	GACNNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	1 cut(s)	974
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	235, 568
Eco47I	GGWCC	2 cut(s)	114, 167
Eco57I	CTGAAG	2 cut(s)	854, 869
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	235, 568
ErhI	CCWWGG	2 cut(s)	235, 568
FaeI	CATG	3 cut(s)	58, 211, 770
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 651, 683
FaqI	GGGAC	3 cut(s)	127, 153, 550
FatI	CATG	3 cut(s)	54, 207, 766
Fnu4HI	GCNGC	4 cut(s)	310, 313, 750, 904
FokI	GGATG	3 cut(s)	115, 341, 364
Fsp4HI	GCNGC	4 cut(s)	310, 313, 750, 904
FspBI	CTAG	3 cut(s)	84, 236, 872
GlaI	GCGC	3 cut(s)	158, 233, 357
GluI	GCNGC	4 cut(s)	310, 313, 750, 904
GsaI	CCCAGC	3 cut(s)	405, 943, 947
HaeII	RGCGCY	2 cut(s)	160, 235
HaeIII	GGCC	1 cut(s)	976
HapII	CCGG	7 cut(s)	76, 132, 171, 300, 390, 456, 473
HhaI	GCGC	3 cut(s)	159, 234, 358
Hin1II	CATG	3 cut(s)	58, 211, 770
Hin6I	GCGC	3 cut(s)	157, 232, 356
HinP1I	GCGC	3 cut(s)	157, 232, 356
HinfI	GANTC	6 cut(s)	192, 266, 406, 563, 676, 919
HpaII	CCGG	7 cut(s)	76, 132, 171, 300, 390, 456, 473
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	820, 911
Hpy188I	TCNGA	6 cut(s)	38, 139, 163, 191, 517, 616
Hpy188III	TCNNGA	6 cut(s)	97, 112, 132, 224, 425, 916
Hpy8I	GTNNAC	2 cut(s)	820, 911
Hpy99I	CGWCG	6 cut(s)	29, 52, 200, 256, 290, 416
HpyAV	CCTTC	4 cut(s)	69, 299, 717, 844
HpyCH4III	ACNGT	4 cut(s)	48, 580, 814, 896
HpyCH4V	TGCA	7 cut(s)	332, 551, 560, 637, 752, 866, 906
HpyF10VI	GCNNNNNNNGC	6 cut(s)	238, 309, 355, 557, 746, 844
HpyF3I	CTNAG	3 cut(s)	516, 719, 955
Hsp92II	CATG	3 cut(s)	58, 211, 770
HspAI	GCGC	3 cut(s)	157, 232, 356
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	5 cut(s)	134, 463, 593, 868, 947
LmnI	GCTCC	7 cut(s)	39, 76, 150, 164, 192, 365, 398
Lsp1109I	GCAGC	3 cut(s)	321, 736, 890
LweI	GCATC	3 cut(s)	137, 319, 442
MaeI	CTAG	3 cut(s)	84, 236, 872
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	5 cut(s)	136, 465, 595, 870, 949
MboI	GATC	5 cut(s)	134, 463, 593, 868, 947
MboII	GAAGA	6 cut(s)	100, 112, 458, 493, 537, 542
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	2 cut(s)	134, 868
MhlI	GDGCHC	2 cut(s)	14, 956
MlsI	TGGCCA	1 cut(s)	976
MluCI	AATT	3 cut(s)	293, 333, 625
MluNI	TGGCCA	1 cut(s)	976
MlyI	GAGTC	4 cut(s)	201, 260, 572, 670
MmeI	TCCRAC	2 cut(s)	472, 626
MnlI	CCTC	5 cut(s)	117, 135, 356, 432, 433
Mox20I	TGGCCA	1 cut(s)	976
MroI	TCCGGA	1 cut(s)	131
MroXI	GAANNNNTTC	2 cut(s)	104, 107
MscI	TGGCCA	1 cut(s)	976
MseI	TTAA	2 cut(s)	755, 890
MslI	CAYNNNNRTG	2 cut(s)	771, 982
Msp20I	TGGCCA	1 cut(s)	976
MspA1I	CMGCKG	3 cut(s)	832, 847, 943
MspI	CCGG	7 cut(s)	76, 132, 171, 300, 390, 456, 473
MspR9I	CCNGG	3 cut(s)	76, 171, 457
MunI	CAATTG	1 cut(s)	333
MwoI	GCNNNNNNNGC	6 cut(s)	238, 309, 355, 557, 746, 844
NciI	CCSGG	3 cut(s)	76, 171, 457
NdeII	GATC	5 cut(s)	134, 463, 593, 868, 947
NlaIII	CATG	3 cut(s)	58, 211, 770
NlaIV	GGNNCC	5 cut(s)	22, 115, 136, 146, 169
NspI	RCATGY	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	982
PdmI	GAANNNNTTC	2 cut(s)	104, 107
PfeI	GAWTC	2 cut(s)	406, 919
Pfl23II	CGTACG	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	311, 314, 751, 905
PleI	GAGTC	4 cut(s)	200, 260, 571, 670
PpsI	GAGTC	4 cut(s)	200, 260, 571, 670
PspEI	GGTNACC	1 cut(s)	442
PspFI	CCCAGC	3 cut(s)	401, 939, 943
PspLI	CGTACG	1 cut(s)	199
PspN4I	GGNNCC	5 cut(s)	22, 115, 136, 146, 169
PspPI	GGNCC	2 cut(s)	114, 167
PstI	CTGCAG	1 cut(s)	908
PsuI	RGATCY	2 cut(s)	134, 868
PvuII	CAGCTG	3 cut(s)	832, 847, 943
RsaI	GTAC	5 cut(s)	201, 485, 713, 898, 910
RsaNI	GTAC	5 cut(s)	200, 484, 712, 897, 909
RseI	CAYNNNNRTG	2 cut(s)	771, 982
SaqAI	TTAA	2 cut(s)	755, 890
SatI	GCNGC	4 cut(s)	310, 313, 750, 904
Sau3AI	GATC	5 cut(s)	134, 463, 593, 868, 947
Sau96I	GGNCC	2 cut(s)	114, 167
SchI	GAGTC	4 cut(s)	201, 260, 572, 670
ScrFI	CCNGG	3 cut(s)	76, 171, 457
SduI	GDGCHC	2 cut(s)	14, 956
SfaNI	GCATC	3 cut(s)	137, 319, 442
SfcI	CTRYAG	1 cut(s)	904
SinI	GGWCC	2 cut(s)	114, 167
SmiMI	CAYNNNNRTG	2 cut(s)	771, 982
Sse9I	AATT	3 cut(s)	293, 333, 625
SsiI	CCGC	5 cut(s)	18, 216, 313, 326, 349
SspMI	CTAG	3 cut(s)	84, 236, 872
StyD4I	CCNGG	3 cut(s)	74, 169, 455
StyI	CCWWGG	2 cut(s)	235, 568
TaaI	ACNGT	4 cut(s)	48, 580, 814, 896
TaqI	TCGA	3 cut(s)	258, 699, 917
TasI	AATT	3 cut(s)	293, 333, 625
TatI	WGTACW	3 cut(s)	711, 896, 908
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	406, 919
Tru1I	TTAA	2 cut(s)	755, 890
Tru9I	TTAA	2 cut(s)	755, 890
TscAI	CASTG	2 cut(s)	19, 583
TseI	GCWGC	3 cut(s)	309, 749, 903
TspDTI	ATGAA	1 cut(s)	894
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	19, 583
VpaK11BI	GGWCC	2 cut(s)	114, 167
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	211
XmaJI	CCTAGG	1 cut(s)	235
XmnI	GAANNNNTTC	2 cut(s)	104, 107
XspI	CTAG	3 cut(s)	84, 236, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.