Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26403848 .. 26404365

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAGCGAGTCCCGCCGGAGGTGATCGAGTCGATCCGGAAAAACAAGGTGTGCTTGAAGGGCGGGCTGAAGACTCCGGTGGGCGGCGGCGTGAGCTTGCTCAACGTGCAGCTGAGAAAAGAGCTCGACTTATACGCTTCGCTAGTAAACTGCTTCAACCTACCCAGCCTCCCCACCCGCCACGAGAACATGGACATTGTCGAGAGAACACCGAGGGCGAATACGCCGGGCTCAAGCACGAGGTCGTCCCTAGCGTCGTTGACAGCCTCAAGGAAGAAGGTGACTGTTGTGCACAAAGCCAACATTATGAAGCTAGCTGATGGGTTGTTCTTGGAGTCCTGCAGAGAGGTTGCTACAAAGTACCCCAAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009987 GO:0015980 GO:0016999 GO:0017144 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

125

Amino Acids

13.68

Weight (kDa)

9.97

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	3 - 59	1.6e-06	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	5 cut(s)	14, 63, 84, 87, 178
AclWI	GGATC	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	19, 83
AgsI	TTSAA	2 cut(s)	58, 157
AluBI	AGCT	5 cut(s)	96, 112, 124, 313, 317
AluI	AGCT	5 cut(s)	96, 112, 124, 313, 317
Alw21I	GWGCWC	2 cut(s)	126, 294
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	34, 292
AsuNHI	GCTAGC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	294
BanII	GRGCYC	2 cut(s)	126, 233
BauI	CACGAG	2 cut(s)	182, 238
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	126, 294
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	3 cut(s)	143, 251, 314
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	3 cut(s)	85, 88, 110
BlsI	GCNGC	3 cut(s)	86, 89, 111
Bme1390I	CCNGG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	217, 253
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	2 cut(s)	36, 76
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 83
BseAI	TCCGGA	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	19, 83
BseMII	CTCAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	126, 294
BsiSI	CCGG	4 cut(s)	17, 37, 77, 227
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	19, 83
BsmFI	GGGAC	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	126, 233, 294
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	24, 33
BspACI	CCGC	5 cut(s)	14, 63, 84, 87, 178
BspCNI	CTCAG	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	344
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	24, 33
BssSI	CACGAG	2 cut(s)	182, 238
Bst2BI	CACGAG	2 cut(s)	182, 238
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	65, 98, 315
BstDEI	CTNAG	1 cut(s)	113
BstKTI	GATC	2 cut(s)	27, 36
BstMBI	GATC	2 cut(s)	24, 33
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 60, 93, 106
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	77
Cac8I	GCNNGC	3 cut(s)	65, 98, 315
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	26, 35
DpnII	GATC	2 cut(s)	24, 33
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	2 cut(s)	126, 233
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	124
EcoT38I	GRGCYC	2 cut(s)	126, 233
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	133, 191, 308
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	189
FauI	CCCGC	3 cut(s)	21, 56, 185
Fnu4HI	GCNGC	3 cut(s)	85, 88, 110
FriOI	GRGCYC	2 cut(s)	126, 233
Fsp4HI	GCNGC	3 cut(s)	85, 88, 110
FspBI	CTAG	3 cut(s)	143, 251, 314
GluI	GCNGC	3 cut(s)	85, 88, 110
GsaI	CCCAGC	1 cut(s)	168
HapII	CCGG	4 cut(s)	17, 37, 77, 227
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	9, 29, 73, 335
HpaII	CCGG	4 cut(s)	17, 37, 77, 227
HphI	GGTGA	2 cut(s)	34, 292
Hpy166II	GTNNAC	3 cut(s)	148, 261, 292
Hpy188III	TCNNGA	2 cut(s)	37, 202
Hpy8I	GTNNAC	3 cut(s)	148, 261, 292
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	52, 271
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	109, 292, 342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 60, 93, 106
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	24, 33
LpnPI	CCDG	6 cut(s)	30, 50, 90, 178, 240, 352
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	3 cut(s)	143, 251, 314
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	26, 35
MboI	GATC	2 cut(s)	24, 33
MboII	GAAGA	2 cut(s)	82, 286
MhlI	GDGCHC	3 cut(s)	126, 233, 294
MlyI	GAGTC	4 cut(s)	18, 38, 67, 344
MnlI	CCTC	6 cut(s)	13, 179, 207, 234, 277, 340
MroI	TCCGGA	1 cut(s)	36
MseI	TTAA	1 cut(s)	373
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	4 cut(s)	17, 37, 77, 227
MspR9I	CCNGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	13, 60, 93, 106
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	24, 33
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	86, 89, 111
PleI	GAGTC	4 cut(s)	17, 37, 67, 343
PpsI	GAGTC	4 cut(s)	17, 37, 67, 343
Psp124BI	GAGCTC	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	3 cut(s)	85, 88, 110
Sau3AI	GATC	2 cut(s)	24, 33
SchI	GAGTC	4 cut(s)	18, 38, 67, 344
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	3 cut(s)	126, 233, 294
SfcI	CTRYAG	1 cut(s)	340
SmlI	CTYRAG	2 cut(s)	232, 268
SmoI	CTYRAG	2 cut(s)	232, 268
SsiI	CCGC	5 cut(s)	14, 63, 84, 87, 178
SspMI	CTAG	3 cut(s)	143, 251, 314
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	27, 32, 126, 201
TauI	GCSGC	2 cut(s)	87, 90
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	17, 323
Tth111I	GACNNNGTC	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	290
XspI	CTAG	3 cut(s)	143, 251, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.