pycom07g26400

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
26419418 .. 26419864
447 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGCTCGAGCTCCACAGGTATGGCACCGCTCTTTTACATGTTTTTGCTTTGATTCGAGTTTTTTCCAAGGCCGACGTGGCGATTCTCTGCGAGGATTGCAATGGGAGAGGGTGGCTGCTCTGTGATTTTTGCAAAGGGCAGAAAACGAATGTGAAATCCGAGACAAATCGAATCTACGGCAGATGCCCATCTTGCGGAACTGTGAGTTTTGAACTCCTCCTCACAAGAGAAAGCCCAATAACTTTTTGTTTCAGAGGCTATGTCCGAATAATGAAGGACCTAAGAGAGCTTTATTTGGAAGTAGAAGTCAAGGTAATTGTTTGCTCCCAATCCTCATCCTCTCTTCACGTTTTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.71

Weight (kDa)

8.45

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 2 cut(s) 27, 195
AfiI CCNNNNNNNGG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 212
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 2 cut(s) 10, 289
AluI AGCT 2 cut(s) 10, 289
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 206, 209
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 12
BspACI CCGC 2 cut(s) 27, 195
BspANI GGCC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 155
BstMWI GCNNNNNNNGC 3 cut(s) 77, 96, 192
BstNSI RCATGY 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 20
BsuRI GGCC 1 cut(s) 71
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 277
CviAII CATG 1 cut(s) 38
CviJI RGCY 6 cut(s) 10, 71, 115, 234, 258, 289
CviKI_1 RGCY 6 cut(s) 10, 71, 115, 234, 258, 289
DdeI CTNAG 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 41
FaiI YATR 3 cut(s) 21, 39, 261
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 41
HinfI GANTC 3 cut(s) 52, 82, 171
Hpy188I TCNGA 3 cut(s) 160, 254, 266
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 75, 348
HpyCH4V TGCA 2 cut(s) 99, 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 96, 192
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 75, 348
Hsp92II CATG 1 cut(s) 41
LmnI GCTCC 2 cut(s) 15, 329
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 173
MaeII ACGT 2 cut(s) 75, 348
MbiI CCGCTC 1 cut(s) 29
MboII GAAGA 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 315
MnlI CCTC 7 cut(s) 85, 101, 227, 230, 248, 343, 349
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 18
MwoI GCNNNNNNNGC 3 cut(s) 77, 96, 192
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 25
NspI RCATGY 1 cut(s) 41
PaeR7I CTCGAG 1 cut(s) 5
PciI ACATGT 1 cut(s) 37
PfeI GAWTC 3 cut(s) 52, 82, 171
PkrI GCNGC 1 cut(s) 117
PpuMI RGGWCCY 1 cut(s) 277
PscI ACATGT 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
PspXI VCTCGAGB 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 277
SduI GDGCHC 1 cut(s) 12
SetI ASST 7 cut(s) 12, 20, 78, 282, 291, 315, 351
SfaNI GCATC 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 5
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 27, 195
SstI GAGCTC 1 cut(s) 12
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 2 cut(s) 78, 351
TaqI TCGA 3 cut(s) 6, 55, 169
TasI AATT 1 cut(s) 315
TfiI GAWTC 3 cut(s) 52, 82, 171
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 277
XceI RCATGY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.