pycom07g26740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
26677107 .. 26677481
375 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGAGGGGGCGGTCGTGGGCCTCCTCGGGGTTGGTTTCGTGGTCGTCGGAGGTGGAGAGGTTGATGCAGGAGCAGCGCTCAAGGGAGGCGAAGAAGGCGGATGCCACGTGGGTCCCAAGCCAACTGGCGACGCCGTTGATCTTCTCGTACGATAGGCACGAGCTCTGGCTCTGGCTCTCCATTGTCGGAACAGATTCTTTGTTTTTTGGCAGTGCGCAGTCAGAGAAAGAGAAACAGAGGAGGCAGATTCCTCAAATATCCCAAGAAAGTCAAACGCCGATTCCTCCGACCGTTTTTCCGCCCTCTTCCTTTTGTTGTTTGTTGTTCCTTAACCTTAGGAACTCGCTTTTACCAAAATTTACTATGTACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.3

Weight (kDa)

9.14

Isoelectric Point (pI)

69.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AciI CCGC 3 cut(s) 10, 98, 299
AcsI RAATTY 1 cut(s) 356
AcvI CACGTG 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 2 cut(s) 149, 368
AfeI AGCGCT 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 369
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 77
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 193
AspLEI GCGC 2 cut(s) 78, 217
AspS9I GGNCC 2 cut(s) 18, 112
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 335
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 158
BbrPI CACGTG 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 79
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 18, 112
BmiI GGNNCC 2 cut(s) 113, 114
BmsI GCATC 2 cut(s) 54, 91
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpuEI CTTGAG 1 cut(s) 64
BsaAI YACGTR 2 cut(s) 108, 370
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 13, 253
BseXI GCAGC 1 cut(s) 85
Bsh1285I CGRYCG 2 cut(s) 14, 291
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 2 cut(s) 14, 291
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 25
BsiWI CGTACG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 3 cut(s) 10, 98, 299
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 113, 114
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 131
BssSI CACGAG 1 cut(s) 158
Bst2BI CACGAG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 131
BstBAI YACGTR 2 cut(s) 108, 370
BstDEI CTNAG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 2 cut(s) 78, 217
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMCI CGRYCG 2 cut(s) 14, 291
BstMWI GCNNNNNNNGC 2 cut(s) 73, 95
BstV1I GCAGC 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 335
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
CfoI GCGC 2 cut(s) 78, 217
Cfr13I GGNCC 2 cut(s) 18, 112
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 148, 367
CviJI RGCY 5 cut(s) 20, 120, 163, 169, 175
CviKI_1 RGCY 5 cut(s) 20, 120, 163, 169, 175
CviQI GTAC 2 cut(s) 148, 367
DdeI CTNAG 1 cut(s) 335
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 2 cut(s) 113, 288
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 163
Eco72I CACGTG 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 165
FaiI YATR 1 cut(s) 365
FaqI GGGAC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 74
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 2 cut(s) 77, 216
GluI GCNGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 1 cut(s) 139
HhaI GCGC 2 cut(s) 78, 217
Hin1I GRCGYC 1 cut(s) 131
Hin6I GCGC 2 cut(s) 76, 215
HinP1I GCGC 2 cut(s) 76, 215
HinfI GANTC 3 cut(s) 194, 247, 280
Hpy188I TCNGA 4 cut(s) 49, 188, 223, 288
Hpy99I CGWCG 2 cut(s) 49, 133
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 107, 369
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 95
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 2 cut(s) 107, 369
Hsp92I GRCGYC 1 cut(s) 131
HspAI GCGC 2 cut(s) 76, 215
KflI GGGWCCC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 53, 110, 151, 157
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 54, 91
MaeII ACGT 2 cut(s) 107, 369
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 103, 133, 297
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 356
MmeI TCCRAC 3 cut(s) 27, 166, 311
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 73, 95
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 2 cut(s) 113, 114
NsbI TGCGCA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 3 cut(s) 194, 247, 280
Pfl23II CGTACG 1 cut(s) 147
PkrI GCNGC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
Ppu21I YACGTR 2 cut(s) 108, 370
PpuMI RGGWCCY 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 112
PspCI CACGTG 1 cut(s) 108
PspLI CGTACG 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 113, 114
PspPI GGNCC 2 cut(s) 18, 112
PspPPI RGGWCCY 1 cut(s) 112
RsaI GTAC 2 cut(s) 149, 368
RsaNI GTAC 2 cut(s) 148, 367
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 18, 112
SduI GDGCHC 1 cut(s) 165
SetI ASST 6 cut(s) 54, 62, 110, 165, 336, 372
SfaNI GCATC 2 cut(s) 54, 91
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 1 cut(s) 356
SsiI CCGC 3 cut(s) 10, 98, 299
SstI GAGCTC 1 cut(s) 165
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 2 cut(s) 110, 372
TasI AATT 1 cut(s) 356
TfiI GAWTC 3 cut(s) 194, 247, 280
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 73
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.