Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26760127 .. 26762575

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCTTTATAATTTATTGTTTAGTCCGGTTATAAACCGCGAGGAATTCTTTGTAGTATTAATATGGCTCATTTCAAATTTGTCGCAGAATTACTTAATTGGAGCGTTCAAACCATCCTGCAACATTTCAATCACATTTTCTGATGCCAAAACTCGGAAGCAGGTCCCTTTAAAGAAGGAAAGTGGCCAAGCAGTATTGGTCCCACTTTTTCAAAGTCAAGAAAACATTTCTGGGAAGATTAATATAGAACCAATTCAAGGGAAGAAGGTCGAACACAATGGAGTTAAGGTCGAGCTTCTCGGTCAAATTGAGATGTACTTTGACAGAGGCAACTTTTATGACTTTACTTCTCTTGTTCGTGAACTTGACGTTCCTGGAGAGATATATGAAAGGAAAACATATCCTTTCGAGTTTTCTACAGTTGAGATGCCATATGAGACTTACAATGGGGTGAATGTGAGACTTAGGTATGTTCTGAAAGTCACAATTAGTCGTGGTTATGGTAGTAGCATAGTGGAATATCAGGATTTTGTGGTTCGCAACTATTCCCCACCTCCATCTATTAACAATAGCATCAAGATGGAAGTCGGAATCGAAGATTGTCTGCACATTGAGTTTGAGTACAACAAGAGCAAGTACCATCTGAAAGATGTTATTATTGGCAAGATATATTTCCTTCTTGTGAGAATCAAAATAAAGAATATGGATCGATCAGGCGTCGAGAGTCAACAGGGTCGGGGCCCAATACCCATGTTGAGACAGAGACACTTGCTAAGTTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps26

Protein Analysis

262

Amino Acids

30.21

Weight (kDa)

8.85

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	36 - 237	9.3e-91	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	9, 32
Acc36I	ACCTGC	1 cut(s)	151
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	714
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	44, 76
AcyI	GRCGYC	1 cut(s)	717
AfaI	GTAC	3 cut(s)	317, 623, 638
AfiI	CCNNNNNNNGG	2 cut(s)	153, 257
AgsI	TTSAA	5 cut(s)	75, 109, 129, 212, 257
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	4 cut(s)	431, 454, 751, 757
AlwI	GGATC	1 cut(s)	714
AoxI	GGCC	2 cut(s)	184, 739
ApaI	GGGCCC	1 cut(s)	743
ApoI	RAATTY	2 cut(s)	44, 76
AseI	ATTAAT	2 cut(s)	59, 240
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	4 cut(s)	163, 199, 739, 740
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	2 cut(s)	163, 199
BaeGI	GKGCMC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	743
BccI	CCATC	4 cut(s)	121, 565, 574, 648
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	4 cut(s)	431, 454, 751, 757
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	2 cut(s)	163, 199
BmgT120I	GGNCC	4 cut(s)	163, 199, 739, 740
BmiI	GGNNCC	4 cut(s)	165, 201, 740, 741
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	3 cut(s)	133, 417, 582
BpmI	CTGGAG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 257
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	709
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	153, 257
BseSI	GKGCMC	1 cut(s)	743
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	186, 741
BshVI	ATCGAT	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	149, 185
BslI	CCNNNNNNNGG	2 cut(s)	153, 257
BsmAI	GTCTC	4 cut(s)	431, 454, 751, 757
BsmFI	GGGAC	2 cut(s)	149, 185
BsnI	GGCC	2 cut(s)	186, 741
Bsp120I	GGGCCC	1 cut(s)	739
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	2 cut(s)	706, 710
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	186, 741
BspDI	ATCGAT	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	4 cut(s)	165, 201, 740, 741
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	714
BssMI	GATC	2 cut(s)	706, 710
BssNI	GRCGYC	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	717
BstDEI	CTNAG	2 cut(s)	464, 773
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	709, 713
BstMAI	GTCTC	4 cut(s)	431, 454, 751, 757
BstMBI	GATC	2 cut(s)	706, 710
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	743
BstUI	CGCG	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	186, 741
BsuTUI	ATCGAT	1 cut(s)	709
BtsCI	GGATG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	163, 199, 739, 740
ClaI	ATCGAT	1 cut(s)	709
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	3 cut(s)	316, 622, 637
CviAII	CATG	1 cut(s)	751
CviJI	RGCY	4 cut(s)	67, 186, 295, 741
CviKI_1	RGCY	4 cut(s)	67, 186, 295, 741
CviQI	GTAC	3 cut(s)	316, 622, 637
DdeI	CTNAG	2 cut(s)	464, 773
DpnI	GATC	2 cut(s)	708, 712
DpnII	GATC	2 cut(s)	706, 710
DraI	TTTAAA	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	743
Eco47I	GGWCC	2 cut(s)	163, 199
EcoO109I	RGGNCCY	2 cut(s)	163, 739
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	743
FaeI	CATG	1 cut(s)	754
FaqI	GGGAC	2 cut(s)	149, 185
FatI	CATG	1 cut(s)	750
FauNDI	CATATG	1 cut(s)	433
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	743
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	186, 741
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	706
Hin1I	GRCGYC	1 cut(s)	717
Hin1II	CATG	1 cut(s)	754
HincII	GTYRAC	1 cut(s)	728
HindII	GTYRAC	1 cut(s)	728
HinfI	GANTC	3 cut(s)	591, 687, 724
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	2 cut(s)	362, 728
Hpy188I	TCNGA	5 cut(s)	142, 156, 477, 590, 645
Hpy188III	TCNNGA	5 cut(s)	218, 359, 524, 577, 721
Hpy8I	GTNNAC	2 cut(s)	362, 728
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	169, 259, 686
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	120, 607
HpyF3I	CTNAG	2 cut(s)	464, 773
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	717
Hsp92II	CATG	1 cut(s)	754
Kzo9I	GATC	2 cut(s)	706, 710
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	9 cut(s)	39, 130, 146, 216, 360, 387, 509, 699, 716
LweI	GCATC	3 cut(s)	133, 417, 582
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	708, 712
MboI	GATC	2 cut(s)	706, 710
MboII	GAAGA	3 cut(s)	247, 274, 608
MhlI	GDGCHC	1 cut(s)	743
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	8 cut(s)	10, 44, 76, 88, 96, 252, 306, 486
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	733
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	3 cut(s)	34, 320, 564
Mox20I	TGGCCA	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	6 cut(s)	59, 95, 170, 240, 285, 564
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	186
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	706, 710
NlaIII	CATG	1 cut(s)	754
NlaIV	GGNNCC	4 cut(s)	165, 201, 740, 741
NmuCI	GTSAC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	591, 687
PfoI	TCCNGGA	1 cut(s)	373
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PpuMI	RGGWCCY	1 cut(s)	163
PshBI	ATTAAT	2 cut(s)	59, 240
PsiI	TTATAA	2 cut(s)	9, 32
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	4 cut(s)	165, 201, 740, 741
PspOMI	GGGCCC	1 cut(s)	739
PspPI	GGNCC	4 cut(s)	163, 199, 739, 740
PspPPI	RGGWCCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	317, 623, 638
RsaNI	GTAC	3 cut(s)	316, 622, 637
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	6 cut(s)	59, 95, 170, 240, 285, 564
Sau3AI	GATC	2 cut(s)	706, 710
Sau96I	GGNCC	4 cut(s)	163, 199, 739, 740
SchI	GAGTC	1 cut(s)	733
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	743
SetI	ASST	7 cut(s)	165, 270, 291, 297, 372, 470, 556
SfaNI	GCATC	3 cut(s)	133, 417, 582
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	163, 199
SmiMI	CAYNNNNRTG	1 cut(s)	578
Sse9I	AATT	8 cut(s)	10, 44, 76, 88, 96, 252, 306, 486
SsiI	CCGC	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	6 cut(s)	270, 291, 408, 594, 709, 720
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	8 cut(s)	10, 44, 76, 88, 96, 252, 306, 486
TatI	WGTACW	2 cut(s)	315, 621
TfiI	GAWTC	2 cut(s)	591, 687
Tru1I	TTAA	6 cut(s)	59, 95, 170, 240, 285, 564
Tru9I	TTAA	6 cut(s)	59, 95, 170, 240, 285, 564
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	163, 199
VspI	ATTAAT	2 cut(s)	59, 240
XapI	RAATTY	2 cut(s)	44, 76
XmnI	GAANNNNTTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.