Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26963061 .. 26963337

Gene Structure 277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCTTGCACACCGATACGTGTATTGTGTGCATGGATAGAGTGGAAGGAGGGCAAAGGAGTGCCTAGATGCGCTTGGATTGACGAGGGACAGTTTACGTGTCCTCTTTGTCGATCCAATCTATTCCCAAAGAATTGTACTACTCCAGAATCAAAAGGTCATGAACGGGCCGGGAGTTGGATCCATGGAGGGAGGAGAGGATCATTTACTTGTTTGGTGACGATTACCAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

79

Amino Acids

8.67

Weight (kDa)

8.82

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	108, 175, 188, 208
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflIII	ACRYGT	2 cut(s)	19, 98
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
AlwI	GGATC	4 cut(s)	108, 175, 188, 208
AoxI	GGCC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	172
BfaI	CTAG	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	172
BsaAI	YACGTR	2 cut(s)	20, 99
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	113, 180, 200
Bsp19I	CCATGG	1 cut(s)	184
BspANI	GGCC	1 cut(s)	170
BspHI	TCATGA	2 cut(s)	160, 233
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	4 cut(s)	108, 175, 188, 208
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	3 cut(s)	113, 180, 200
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	93
BstBAI	YACGTR	2 cut(s)	20, 99
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	116, 183, 203
BstMBI	GATC	3 cut(s)	113, 180, 200
BstSCI	CCNGG	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	2 cut(s)	160, 233
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	4 cut(s)	33, 161, 185, 234
CviJI	RGCY	3 cut(s)	5, 170, 231
CviKI_1	RGCY	3 cut(s)	5, 170, 231
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	3 cut(s)	115, 182, 202
DpnII	GATC	3 cut(s)	113, 180, 200
Eco130I	CCWWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	4 cut(s)	36, 164, 188, 237
FaiI	YATR	4 cut(s)	34, 162, 186, 235
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	4 cut(s)	32, 160, 184, 233
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	36, 164, 188, 237
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188III	TCNNGA	3 cut(s)	146, 161, 234
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	2 cut(s)	19, 98
HpyCH4V	TGCA	2 cut(s)	9, 32
HpySE526I	ACGT	2 cut(s)	19, 98
Hsp92II	CATG	4 cut(s)	36, 164, 188, 237
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	113, 180, 200
LpnPI	CCDG	2 cut(s)	159, 184
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	19, 98
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	115, 182, 202
MboI	GATC	3 cut(s)	113, 180, 200
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	43, 79, 114, 182, 186, 191
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	172
NciI	CCSGG	1 cut(s)	172
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	3 cut(s)	113, 180, 200
NlaIII	CATG	4 cut(s)	36, 164, 188, 237
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	217
PagI	TCATGA	2 cut(s)	160, 233
PfeI	GAWTC	1 cut(s)	149
Ppu21I	YACGTR	2 cut(s)	20, 99
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	113, 180, 200
Sau96I	GGNCC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	4 cut(s)	22, 101, 160, 233
SfaNI	GCATC	1 cut(s)	59
Sse9I	AATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	2 cut(s)	22, 101
TaqI	TCGA	1 cut(s)	112
TasI	AATT	1 cut(s)	133
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	177
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.