Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27617047 .. 27617793

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGCTTCTGCAGCAGATGCTATTTGTAGTTTTGATGATGATGGTGCTGATGAAATTAGTCCATGTTCAAGGACGACCACAGTCTGCGTCATGGATGCGTCCGGCCGCCTGGGCTCCTCTCTCGTCCACCGCCTCTTGCACAGAGGCTATGCAGTCCATGCTGCACTCCAAACCCATCACAGAATTTATGGCAGAGGCAGAGGTCAGAGCAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

3Beta_HSD Epimerase NAD_binding_10

Protein Analysis

73

Amino Acids

7.63

Weight (kDa)

6.95

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 130
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	11, 161, 210
ApoI	RAATTY	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	23, 148
BccI	CCATC	2 cut(s)	35, 183
BciT130I	CCWGG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	4 cut(s)	12, 106, 162, 211
BlsI	GCNGC	4 cut(s)	13, 107, 163, 212
Bme1390I	CCNGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	7, 85
BoxI	GACNNNNGTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	23, 148
BsgI	GTGCAG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	116
BspACI	CCGC	2 cut(s)	106, 130
BspANI	GGCC	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	82
BstAPI	GCANNNNNTGC	2 cut(s)	17, 158
BstF5I	GGATG	1 cut(s)	100
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 17, 111, 158
BstNI	CCWGG	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	23, 148
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	100
CseI	GACGC	2 cut(s)	76, 87
CviAII	CATG	3 cut(s)	63, 91, 158
CviJI	RGCY	5 cut(s)	5, 105, 114, 147, 213
CviKI_1	RGCY	5 cut(s)	5, 105, 114, 147, 213
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	116
Eco52I	CGGCCG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	3 cut(s)	66, 94, 161
FaiI	YATR	6 cut(s)	64, 92, 150, 159, 189, 217
FatI	CATG	3 cut(s)	62, 90, 157
Fnu4HI	GCNGC	4 cut(s)	12, 106, 162, 211
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	4 cut(s)	12, 106, 162, 211
GluI	GCNGC	4 cut(s)	12, 106, 162, 211
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	2 cut(s)	76, 87
Hin1II	CATG	3 cut(s)	66, 94, 161
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	11, 139, 152, 164
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 17, 111, 158
Hsp92II	CATG	3 cut(s)	66, 94, 161
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	3 cut(s)	95, 115, 122
Lsp1109I	GCAGC	2 cut(s)	23, 148
LweI	GCATC	2 cut(s)	7, 85
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	54, 183
MnlI	CCTC	5 cut(s)	127, 137, 143, 188, 194
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	4 cut(s)	11, 17, 111, 158
NlaIII	CATG	3 cut(s)	66, 94, 161
NlaIV	GGNNCC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	13, 107, 163, 212
PshAI	GACNNNNGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	13
SatI	GCNGC	4 cut(s)	12, 106, 162, 211
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	2 cut(s)	205, 215
SfaNI	GCATC	2 cut(s)	7, 85
SfcI	CTRYAG	1 cut(s)	9
SgeI	CNNG	9 cut(s)	75, 81, 103, 114, 121, 122, 134, 148, 170
Sse9I	AATT	2 cut(s)	54, 183
SsiI	CCGC	2 cut(s)	106, 130
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	82
TasI	AATT	2 cut(s)	54, 183
TauI	GCSGC	1 cut(s)	108
TseI	GCWGC	3 cut(s)	11, 161, 210
TspDTI	ATGAA	1 cut(s)	66
XapI	RAATTY	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.