pycom08g00160

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
154900 .. 155501
602 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGTTGTCGGGAATGCTCCACACAAGTGAGGGAACTGGCTTGGAAATGTTACTGTCAGCAAATTATCACCCACCCAGCCCGGAACCAAGTTTAACACTAGGATTACCTAAACACGTTCTCAAGGATGGGGAATGGATTTCTGTTGTTGCTCTTCAAAATGCACTTCTGGTTAATGTCGGTTATCAATTACAGCTCGGATTTCAGCTGGGTTTCGTGATGCCTTCCCATGATTCCCTTGTAGAACCTGCTGCAGCTCTTATCAATGCAAGCAATCCCCAACTTTACAAAGGCTTCCCATACAAAGACCTGTTTCTCAACTTTGGTACAACGCTGGGAAAAAACCAAACAAGTACTGGATCGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

122

Amino Acids

13.0

Weight (kDa)

5.67

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 364
AfaI GTAC 2 cut(s) 325, 352
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 24
AluBI AGCT 3 cut(s) 193, 205, 254
AluI AGCT 3 cut(s) 193, 205, 254
AlwI GGATC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 248, 251
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 59
BbvI GCAGC 2 cut(s) 235, 263
BccI CCATC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 253
BisI GCNGC 2 cut(s) 249, 252
BlsI GCNGC 2 cut(s) 250, 253
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 40, 358
BseGI GGATG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 40, 358
BseXI GCAGC 2 cut(s) 235, 263
BseYI CCCAGC 3 cut(s) 74, 205, 331
BsiSI CCGG 1 cut(s) 80
BsmI GAATGC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 156
BsrI ACTGG 2 cut(s) 40, 358
BssMI GATC 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 359
BstMBI GATC 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 235, 263
BtsCI GGATG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 324, 351
CviAII CATG 1 cut(s) 227
CviJI RGCY 6 cut(s) 39, 78, 193, 205, 254, 291
CviKI_1 RGCY 6 cut(s) 39, 78, 193, 205, 254, 291
CviQI GTAC 2 cut(s) 324, 351
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
FaeI CATG 1 cut(s) 230
FaiI YATR 2 cut(s) 228, 298
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 249, 252
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 249, 252
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 249, 252
GsaI CCCAGC 3 cut(s) 78, 209, 335
HapII CCGG 1 cut(s) 80
Hin1II CATG 1 cut(s) 230
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 9, 214
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 161, 251, 266
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 1 cut(s) 356
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 9 cut(s) 21, 88, 93, 152, 191, 258, 317, 320, 339
Lsp1109I GCAGC 2 cut(s) 235, 263
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 1 cut(s) 143
MluCI AATT 2 cut(s) 61, 185
MnlI CCTC 1 cut(s) 22
MseI TTAA 3 cut(s) 92, 171, 364
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 80
NdeII GATC 1 cut(s) 356
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 250, 253
PspFI CCCAGC 3 cut(s) 74, 205, 331
PspN4I GGNNCC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 2 cut(s) 325, 352
RsaNI GTAC 2 cut(s) 324, 351
RseI CAYNNNNRTG 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 92, 171, 364
SatI GCNGC 2 cut(s) 249, 252
Sau3AI GATC 1 cut(s) 356
ScaI AGTACT 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 80
SetI ASST 7 cut(s) 109, 117, 195, 207, 247, 256, 309
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 61, 185
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 117
TasI AATT 2 cut(s) 61, 185
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 92, 171, 364
Tru9I TTAA 3 cut(s) 92, 171, 364
TseI GCWGC 2 cut(s) 248, 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.