Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

408876 .. 410665

Gene Structure 1790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATATTTTGTTTAGAACACTTCAGCACAAATATTGAAAGATCGCGCTCCAACGCAAGCGTTGGACGCAAACAATGTTGTCATACGCTCGACATGCCACTGCCTTTGTCCGCAAACAATGTTTTAGCATCTTCCCTTTTCATATGCACGTCGTCGTCTATAAGAACACCACTGCCTTCAGCCAATCTCAGTCTCAAATCAATCCCAGTTCGCTCTCTCTCCTCCTCCTCCGCTCTCCTACAACCTAGAAACACAAACGCAATGGGCTCCCTCGGTGCCATGGACGTCCCCTTGCACTACCCTACCGCCCGCCGAGACGAGTCCGTCGTCGACGACTACCACGGCGTCAAGGTCGCCGATCCTTACAGATGGCTTGAAGATCCCGACTCCGAAGAGACGAAAGAGTTCGTACAGAAACAAGTAGAACTGACGCAGTCGGTTCTGAAGGAATGCGATACGAGAGGGAAGCTTGGCGAGAAGATCACCAAGCTTTTCGATCACCCGCGTTATGATGCACCTCGTAAGCGAGGGAATAAGTACTTCTACTTCCACAACACTGGGCTTCAACCCCAAAGTGTCCTATACGTGCAGGATAGTTTGGATGGAAAAGCAGAGGTGTTGCTTGATCCCAATACGCTTAGCGAAGATGGGACTGTATCTTTGAACGCTTCTTCAGTAAGCGAGGACGCCAAGTACTTGGCCTATGCCCTTAGTAAAAGTGGCAGTGATTGGGCAACGATTAAGGTGATGCGGATTGAGGATAAGACGGTTGAACCTGAAACTATATCTTGGGTCAAGTTTTCGGGTATTTGCTGGACACATGATCATAAAGGGTTTTTCTACAGCCGCTATCCAGCTCCTAACAGAATGAGAAGGAAAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016787 GO:0019538 GO:0033218 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04614 map04614

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

296

Amino Acids

33.24

Weight (kDa)

8.38

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S9_N	PF02897	101 - 290	1.5e-73	Prolyl oligopeptidase, N-terminal beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AatII	GACGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	2 cut(s)	46, 505
AciI	CCGC	7 cut(s)	111, 231, 306, 310, 503, 751, 847
AclWI	GGATC	3 cut(s)	353, 374, 620
AcuI	CTGAAG	4 cut(s)	7, 162, 464, 657
AcyI	GRCGYC	3 cut(s)	285, 345, 687
AfaI	GTAC	3 cut(s)	411, 539, 695
AgsI	TTSAA	5 cut(s)	38, 377, 566, 664, 773
AjiI	CACGTC	1 cut(s)	150
AluBI	AGCT	3 cut(s)	469, 490, 857
AluI	AGCT	3 cut(s)	469, 490, 857
Alw26I	GTCTC	3 cut(s)	197, 309, 389
AlwI	GGATC	3 cut(s)	353, 374, 620
AoxI	GGCC	1 cut(s)	699
ArsI	GACNNNNNNTTYG	2 cut(s)	643, 675
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	475, 491, 757
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	530, 562
BccI	CCATC	3 cut(s)	363, 596, 641
BceAI	ACGGC	1 cut(s)	358
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	3 cut(s)	197, 309, 389
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	841
BisI	GCNGC	1 cut(s)	847
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	1 cut(s)	848
BmcAI	AGTACT	2 cut(s)	539, 695
BmgBI	CACGTC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	268, 277
BmrI	ACTGGG	2 cut(s)	200, 567
BmsI	GCATC	3 cut(s)	137, 502, 738
BmuI	ACTGGG	2 cut(s)	200, 567
Bpu1102I	GCTNAGC	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	586
BsaHI	GRCGYC	3 cut(s)	285, 345, 687
BsaJI	CCNNGG	3 cut(s)	271, 279, 340
Bse1I	ACTGG	2 cut(s)	206, 562
Bse3DI	GCAATG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	271, 279, 340
BseGI	GGATG	1 cut(s)	607
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	206, 562
BseRI	GAGGAG	3 cut(s)	211, 214, 217
BsgI	GTGCAG	1 cut(s)	608
Bsh1236I	CGCG	2 cut(s)	46, 505
BshFI	GGCC	1 cut(s)	701
BshNI	GGYRCC	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	272, 664
BsmAI	GTCTC	3 cut(s)	197, 309, 389
BsmBI	CGTCTC	2 cut(s)	309, 389
BsmFI	GGGAC	2 cut(s)	272, 664
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
Bsp1720I	GCTNAGC	1 cut(s)	638
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	7 cut(s)	111, 231, 306, 310, 503, 751, 847
BspANI	GGCC	1 cut(s)	701
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	2 cut(s)	46, 505
BspLI	GGNNCC	2 cut(s)	268, 277
BspPI	GGATC	3 cut(s)	353, 374, 620
BspT107I	GGYRCC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	206, 562
BssECI	CCNNGG	3 cut(s)	271, 279, 340
BssMI	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
BssNI	GRCGYC	3 cut(s)	285, 345, 687
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	655, 769
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	3 cut(s)	285, 345, 687
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	58, 310
BstDEI	CTNAG	3 cut(s)	188, 638, 710
BstDSI	CCRYGG	2 cut(s)	279, 340
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	2 cut(s)	46, 505
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	7 cut(s)	44, 361, 382, 483, 499, 628, 826
BstMAI	GTCTC	3 cut(s)	197, 309, 389
BstMBI	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 94
BstNSI	RCATGY	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	841
BstUI	CGCG	2 cut(s)	46, 505
BstX2I	RGATCY	1 cut(s)	379
BstXI	CCANNNNNNTGG	2 cut(s)	557, 697
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	701
BtgI	CCRYGG	2 cut(s)	279, 340
BtrI	CACGTC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	3 cut(s)	98, 170, 730
BtsIMutI	CAGTG	4 cut(s)	98, 170, 555, 730
Cac8I	GCNNGC	2 cut(s)	58, 310
CfoI	GCGC	1 cut(s)	48
CseI	GACGC	4 cut(s)	75, 334, 439, 695
Csp6I	GTAC	3 cut(s)	410, 538, 694
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	3 cut(s)	94, 280, 821
CviJI	RGCY	9 cut(s)	182, 267, 373, 469, 490, 562, 701, 846, 857
CviKI_1	RGCY	9 cut(s)	182, 267, 373, 469, 490, 562, 701, 846, 857
CviQI	GTAC	3 cut(s)	410, 538, 694
DdeI	CTNAG	3 cut(s)	188, 638, 710
DpnI	GATC	7 cut(s)	43, 360, 381, 482, 498, 627, 825
DpnII	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	269
Eco57I	CTGAAG	4 cut(s)	7, 162, 464, 657
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	2 cut(s)	309, 389
FaeI	CATG	3 cut(s)	97, 283, 824
FaqI	GGGAC	2 cut(s)	272, 664
FatI	CATG	3 cut(s)	93, 279, 820
FauI	CCCGC	2 cut(s)	317, 510
FauNDI	CATATG	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	847
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	847
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	847
HaeIII	GGCC	1 cut(s)	701
HgaI	GACGC	4 cut(s)	75, 334, 439, 695
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	3 cut(s)	285, 345, 687
Hin1II	CATG	3 cut(s)	97, 283, 824
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	2 cut(s)	467, 488
HinfI	GANTC	2 cut(s)	320, 386
HphI	GGTGA	3 cut(s)	475, 491, 757
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	391, 444
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	5 cut(s)	154, 157, 329, 332, 335
HpyAV	CCTTC	3 cut(s)	186, 439, 867
HpyCH4III	ACNGT	2 cut(s)	655, 769
HpyCH4IV	ACGT	3 cut(s)	149, 285, 585
HpyCH4V	TGCA	4 cut(s)	147, 295, 515, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 94
HpyF3I	CTNAG	3 cut(s)	188, 638, 710
HpySE526I	ACGT	3 cut(s)	149, 285, 585
Hsp92I	GRCGYC	3 cut(s)	285, 345, 687
Hsp92II	CATG	3 cut(s)	97, 283, 824
HspAI	GCGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
LmnI	GCTCC	3 cut(s)	53, 272, 862
LpnPI	CCDG	6 cut(s)	219, 543, 575, 789, 799, 867
LweI	GCATC	3 cut(s)	137, 502, 738
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	3 cut(s)	149, 285, 585
MalI	GATC	7 cut(s)	43, 360, 381, 482, 498, 627, 825
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
MboII	GAAGA	6 cut(s)	123, 389, 404, 490, 656, 663
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	329, 380
MmeI	TCCRAC	2 cut(s)	43, 75
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	455
MvnI	CGCG	2 cut(s)	46, 505
MwoI	GCNNNNNNNGC	2 cut(s)	66, 94
NcoI	CCATGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
NlaIII	CATG	3 cut(s)	97, 283, 824
NlaIV	GGNNCC	2 cut(s)	268, 277
NmeAIII	GCCGAG	1 cut(s)	338
NspI	RCATGY	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	404
PflFI	GACNNNGTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	848
PleI	GAGTC	2 cut(s)	328, 380
PpsI	GAGTC	2 cut(s)	328, 380
Ppu21I	YACGTR	1 cut(s)	586
PspN4I	GGNNCC	2 cut(s)	268, 277
PsuI	RGATCY	1 cut(s)	379
PsyI	GACNNNGTC	1 cut(s)	433
RsaI	GTAC	3 cut(s)	411, 539, 695
RsaNI	GTAC	3 cut(s)	410, 538, 694
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	1 cut(s)	847
Sau3AI	GATC	7 cut(s)	41, 358, 379, 480, 496, 625, 823
ScaI	AGTACT	2 cut(s)	539, 695
SchI	GAGTC	2 cut(s)	329, 380
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	3 cut(s)	137, 502, 738
SfcI	CTRYAG	1 cut(s)	841
SgrDI	CGTCGACG	1 cut(s)	329
SsiI	CCGC	7 cut(s)	111, 231, 306, 310, 503, 751, 847
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	655, 769
TaiI	ACGT	3 cut(s)	152, 288, 588
TaqI	TCGA	3 cut(s)	90, 330, 495
TatI	WGTACW	2 cut(s)	537, 693
TauI	GCSGC	1 cut(s)	849
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	4 cut(s)	105, 177, 562, 730
TspDTI	ATGAA	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	4 cut(s)	105, 177, 562, 730
Tth111I	GACNNNGTC	1 cut(s)	433
XceI	RCATGY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	1 cut(s)	246
ZraI	GACGTC	1 cut(s)	286
ZrmI	AGTACT	2 cut(s)	539, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.