Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

671155 .. 672342

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTAGGTCAGAGCGCCTCCAGGTTCATAAAGTGCGTGACGGTCGGCGACGGCGCCGTCGGCAAAACCTGCATGCTGATTTCCTACACCAGCAACACCTTTCCCACGGGCAGGAGGATTACAATAGATTAAGACCATTGAGCTATCGAGGGGCGGACGTCTTTATCCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTACGAAAACGTTGCAAAAAAGGTTCCAAATCTTCTTTACAATCCTGTTTACTTTCTTAGTATCTGTGTTTGCAACAATGTTTGGAGTGTGTATGAGTTGTTTGATTTTGTTTTCCGTTTCAGTGGATTCCCGAACTGCGCCATTATGCACCTGGTGTTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04071 ko04072 ko04144 ko04145 ko04150 ko04151 ko04270 ko04310 ko04350 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04611 ko04620 ko04621 ko04650 ko04660 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04921 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05130 ko05131 ko05132 ko05133 ko05152 ko05167 ko05200 ko05203 ko05205 ko05206 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04011 map04013 map04014 map04015 map04022 map04024 map04062 map04071 map04072 map04144 map04145 map04150 map04151 map04270 map04310 map04350 map04360 map04370 map04380 map04510 map04520 map04530 map04611 map04620 map04621 map04650 map04660 map04662 map04664 map04666 map04670 map04722 map04810 map04921 map04932 map04933 map04972 map05014 map05100 map05120 map05130 map05131 map05132 map05133 map05152 map05167 map05200 map05203 map05205 map05206 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

121

Amino Acids

14.28

Weight (kDa)

9.87

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	37 - 78	5.7e-08	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	57
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	1 cut(s)	155
AclI	AACGTT	1 cut(s)	207
AcyI	GRCGYC	2 cut(s)	55, 159
AdeI	CACNNNGTG	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	21, 348
AluBI	AGCT	2 cut(s)	144, 198
AluI	AGCT	2 cut(s)	144, 198
AoxI	GGCC	1 cut(s)	192
AspLEI	GCGC	3 cut(s)	18, 57, 338
BanI	GGYRCC	1 cut(s)	54
BceAI	ACGGC	2 cut(s)	42, 68
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	23, 350
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	2 cut(s)	19, 58
BfuAI	ACCTGC	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	23, 350
BmiI	GGNNCC	2 cut(s)	56, 222
BmrFI	CCNGG	2 cut(s)	23, 350
BpmI	CTGGAG	1 cut(s)	5
BsaHI	GRCGYC	2 cut(s)	55, 159
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	23, 350
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	56, 222
BspMI	ACCTGC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	106
BssNI	GRCGYC	2 cut(s)	55, 159
Bst2UI	CCWGG	2 cut(s)	23, 350
Bst4CI	ACNGT	1 cut(s)	44
BstACI	GRCGYC	2 cut(s)	55, 159
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	75, 196
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	106
BstH2I	RGCGCY	2 cut(s)	19, 58
BstHHI	GCGC	3 cut(s)	18, 57, 338
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 70, 195
BstNI	CCWGG	2 cut(s)	23, 350
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	21, 348
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	75, 196
CfoI	GCGC	3 cut(s)	18, 57, 338
CsiI	ACCWGGT	1 cut(s)	348
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	4 cut(s)	5, 144, 194, 198
CviKI_1	RGCY	4 cut(s)	5, 144, 194, 198
DdeI	CTNAG	1 cut(s)	254
DinI	GGCGCC	1 cut(s)	56
DraIII	CACNNNGTG	1 cut(s)	352
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	21, 348
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
FaeI	CATG	1 cut(s)	77
FaiI	YATR	5 cut(s)	30, 75, 185, 291, 344
FatI	CATG	1 cut(s)	73
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	17, 56, 337
GsuI	CTGGAG	1 cut(s)	5
HaeII	RGCGCY	2 cut(s)	19, 58
HaeIII	GGCC	1 cut(s)	194
HhaI	GCGC	3 cut(s)	18, 57, 338
Hin1I	GRCGYC	2 cut(s)	55, 159
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	3 cut(s)	16, 55, 336
HinP1I	GCGC	3 cut(s)	16, 55, 336
HinfI	GANTC	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	54, 63
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	159, 207
HpyCH4V	TGCA	4 cut(s)	73, 212, 270, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 70, 195
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	2 cut(s)	159, 207
Hsp92I	GRCGYC	2 cut(s)	55, 159
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	3 cut(s)	16, 55, 336
KasI	GGCGCC	1 cut(s)	54
LpnPI	CCDG	8 cut(s)	8, 35, 83, 98, 104, 208, 255, 335
MabI	ACCWGGT	1 cut(s)	348
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	159, 207
MaeIII	GTNAC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	221
Mly113I	GGCGCC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	29, 109, 143
MseI	TTAA	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	23, 350
MvaI	CCWGG	2 cut(s)	23, 350
MwoI	GCNNNNNNNGC	3 cut(s)	61, 70, 195
NarI	GGCGCC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	2 cut(s)	56, 222
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	324
PluTI	GGCGCC	1 cut(s)	58
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	21, 348
PspGI	CCWGG	2 cut(s)	21, 348
PspN4I	GGNNCC	2 cut(s)	56, 222
SaqAI	TTAA	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	23, 350
SexAI	ACCWGGT	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	56
SphI	GCATGC	1 cut(s)	77
SsiI	CCGC	1 cut(s)	155
SspDI	GGCGCC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	21, 348
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	162, 210
TaqI	TCGA	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	325
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.