pycom08g01210

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
903676 .. 903894
219 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGCTGGTGTGCCGTGTCATTGCGGGCAGGGTCAGGCGCATTGCGGACGATGCGCCACCGGAGGAGGATGGCCTGTCCCAACTGTCGGCTGCTGCTAGCTCCTACGATTCTGTAGCCGGATTCGCTGGAATCTACTCCAACCTCGAGGAACTTGTTGTTTATAATCCGAAGGCCATCCTCTCATGCTTCGTAGTCATTTACAAGGCTATGGAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.74

Weight (kDa)

4.61

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AbsI CCTCGAGG 1 cut(s) 143
AciI CCGC 2 cut(s) 23, 44
AfiI CCNNNNNNNGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 70, 171
ApeKI GCWGC 2 cut(s) 89, 92
AspLEI GCGC 2 cut(s) 39, 55
AsuNHI GCTAGC 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 143
BbvI GCAGC 2 cut(s) 76, 79
BccI CCATC 2 cut(s) 62, 182
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 2 cut(s) 90, 93
BlsI GCNGC 2 cut(s) 91, 94
BmeT110I CYCGRG 1 cut(s) 143
BmsI GCATC 1 cut(s) 40
BmtI GCTAGC 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse3DI GCAATG 2 cut(s) 18, 39
BseGI GGATG 2 cut(s) 73, 174
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 2 cut(s) 18, 39
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 76, 79
BshFI GGCC 2 cut(s) 72, 173
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 59, 117
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 2 cut(s) 72, 173
BsoBI CYCGRG 1 cut(s) 143
BspACI CCGC 2 cut(s) 23, 44
BspANI GGCC 2 cut(s) 72, 173
BspOI GCTAGC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 18, 39
Bst4CI ACNGT 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 25, 97
BstF5I GGATG 2 cut(s) 73, 174
BstHHI GCGC 2 cut(s) 39, 55
BstMWI GCNNNNNNNGC 2 cut(s) 50, 122
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 76, 79
BsuRI GGCC 2 cut(s) 72, 173
BtsCI GGATG 2 cut(s) 73, 174
Cac8I GCNNGC 2 cut(s) 25, 97
CfoI GCGC 2 cut(s) 39, 55
CviAII CATG 1 cut(s) 183
CviJI RGCY 6 cut(s) 72, 89, 99, 116, 173, 206
CviKI_1 RGCY 6 cut(s) 72, 89, 99, 116, 173, 206
Eco88I CYCGRG 1 cut(s) 143
FaeI CATG 1 cut(s) 186
FaiI YATR 3 cut(s) 162, 184, 209
FaqI GGGAC 1 cut(s) 61
FatI CATG 1 cut(s) 182
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 90, 93
FokI GGATG 2 cut(s) 80, 161
Fsp4HI GCNGC 2 cut(s) 90, 93
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 38, 54
GluI GCNGC 2 cut(s) 90, 93
HaeIII GGCC 2 cut(s) 72, 173
HapII CCGG 2 cut(s) 59, 117
HhaI GCGC 2 cut(s) 39, 55
Hin1II CATG 1 cut(s) 186
Hin6I GCGC 2 cut(s) 37, 53
HinP1I GCGC 2 cut(s) 37, 53
HinfI GANTC 4 cut(s) 107, 120, 129, 212
HpaII CCGG 2 cut(s) 59, 117
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 122
Hsp92II CATG 1 cut(s) 186
HspAI GCGC 2 cut(s) 37, 53
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 13, 19, 72, 86, 111, 130
Lsp1109I GCAGC 2 cut(s) 76, 79
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 5 cut(s) 55, 58, 139, 152, 188
MspI CCGG 2 cut(s) 59, 117
MwoI GCNNNNNNNGC 2 cut(s) 50, 122
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 143
PfeI GAWTC 3 cut(s) 107, 120, 129
PkrI GCNGC 2 cut(s) 91, 94
PsiI TTATAA 1 cut(s) 162
PspXI VCTCGAGB 1 cut(s) 143
SatI GCNGC 2 cut(s) 90, 93
SetI ASST 2 cut(s) 101, 144
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 2 cut(s) 23, 44
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 144
TfiI GAWTC 3 cut(s) 107, 120, 129
TseI GCWGC 2 cut(s) 89, 92
XhoI CTCGAG 1 cut(s) 143
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.