pycom08g01610

protein binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
1211894 .. 1212343
450 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGCCTCCACCACCATCGTATGAGGATCTCAGCCGTAGCTTTGCTTCTGAAACCTATGATGAATTGACAGGGTTGAGGGACTATTTCTTAGGAGAGGTTATGTACACCTTCCACGCTGTAACTGATGTGGAGTTAAGTTTGTCATTCGGGGATTACGTTGTTGTCCGGAAGGTTCTGTCGTCTTTCCTGCTCGCATGCTTTCATCTTATATTCATGTTCGGATTTATTTCTTTCGTATTGAGGTTAAATTTTAATGTTCAGAGACGTCCACTCAGGTATGTTCGTCAATGCATATGCATTAGCACACCACCGAGTGCATTAGAATATGGATTTCAGTTTTGGGTGCTGCATGCATTAAAGTAG

Protein Analysis

121

Amino Acids

13.98

Weight (kDa)

6.26

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 165
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 314
AfaI GTAC 1 cut(s) 104
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 28, 60
BbvI GCAGC 1 cut(s) 333
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 256
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 165
BseMII CTCAG 2 cut(s) 43, 286
BseXI GCAGC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 42, 285
BspEI TCCGGA 1 cut(s) 165
BspPI GGATC 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 102
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 3 cut(s) 192, 196, 351
BstDEI CTNAG 3 cut(s) 29, 88, 272
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 198, 353
BstV1I GCAGC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Cac8I GCNNGC 3 cut(s) 192, 196, 351
Csp6I GTAC 1 cut(s) 103
CviAII CATG 3 cut(s) 195, 214, 350
CviJI RGCY 2 cut(s) 33, 39
CviKI_1 RGCY 2 cut(s) 33, 39
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 3 cut(s) 29, 88, 272
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 314
EcoT22I ATGCAT 3 cut(s) 293, 299, 355
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 3 cut(s) 198, 217, 353
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 194, 213, 349
FauNDI CATATG 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 347
GluI GCNGC 1 cut(s) 347
HapII CCGG 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 3 cut(s) 198, 217, 353
HpaII CCGG 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 105, 269
Hpy188I TCNGA 3 cut(s) 49, 221, 261
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 105, 269
HpyAV CCTTC 2 cut(s) 118, 163
HpyCH4IV ACGT 2 cut(s) 156, 265
HpyCH4V TGCA 5 cut(s) 291, 297, 317, 349, 353
HpyF3I CTNAG 3 cut(s) 29, 88, 272
HpySE526I ACGT 2 cut(s) 156, 265
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 3 cut(s) 198, 217, 353
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 54, 179, 200, 259
Lsp1109I GCAGC 1 cut(s) 333
MaeII ACGT 2 cut(s) 156, 265
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MflI RGATCY 1 cut(s) 25
MluCI AATT 2 cut(s) 62, 247
MnlI CCTC 5 cut(s) 15, 16, 69, 88, 234
Mph1103I ATGCAT 3 cut(s) 293, 299, 355
MroI TCCGGA 1 cut(s) 165
MseI TTAA 4 cut(s) 134, 245, 252, 356
MspI CCGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 293
NdeII GATC 1 cut(s) 25
NlaIII CATG 3 cut(s) 198, 217, 353
NsiI ATGCAT 3 cut(s) 293, 299, 355
NspI RCATGY 2 cut(s) 198, 353
PaeI GCATGC 2 cut(s) 198, 353
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PkrI GCNGC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 4 cut(s) 134, 245, 252, 356
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 1 cut(s) 25
SetI ASST 9 cut(s) 41, 56, 99, 110, 159, 174, 245, 268, 278
SphI GCATGC 2 cut(s) 198, 353
Sse9I AATT 2 cut(s) 62, 247
TaiI ACGT 2 cut(s) 159, 268
TasI AATT 2 cut(s) 62, 247
TatI WGTACW 1 cut(s) 102
Tru1I TTAA 4 cut(s) 134, 245, 252, 356
Tru9I TTAA 4 cut(s) 134, 245, 252, 356
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 75, 191, 202
XapI RAATTY 1 cut(s) 247
XceI RCATGY 2 cut(s) 198, 353
ZraI GACGTC 1 cut(s) 266
Zsp2I ATGCAT 3 cut(s) 293, 299, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.