Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1393070 .. 1396240

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCGGGCATCAGTGATCCTGTGTTGAAGCGGTTGAAGGAAGGCGAAATTGTGGCGCTCATAAGCGATGCTGGGATGCCGGGCATCAGTGATCCTGCTACGGAATTGGCGAAGCTGTGCGTGGATGAAAACATCCCTGTTATTCCTATACCTGGGCCGTCCGCTTTTGTGGCTGCTCTCTCTGCCTCTGGCCTGTCCACGGATGAGTTTACGTTTGTTGGATTTCTTTCTAAACATGCTGGATCTAGAAGAGAGAGGTTGACGGTTTCAGCAAATGAGGGGACGACCCAAATATTCTATGTGCCTCCCCACAAACTTCAGCAGTTTCTTGAAGAGACTTCTTCAGTTTTTGGTGTTTCAAGAGACCTCTCTAAGAAGGGTATAACTGTAATTTTACAAACCATGAAGGATGATGGAGCCATGGAACAGGAACGAGCTTATGTGGAAGAGGTTGAGGACAAAGACTTCCAAGTCCTTGAACAAAACCGGACTGGGCTGTCGCGATCACGGGCGCTGCATTCAACACATGACAAGCAGATTGTGGTCCTGGACCCCGCCCGGGCCCACTATTCGCTTCTCGCCCTCGATGAACAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

200

Amino Acids

21.72

Weight (kDa)

5.04

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	9 - 112	1.2e-13	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	470, 496
AccII	CGCG	1 cut(s)	502
AciI	CCGC	3 cut(s)	31, 162, 555
AclWI	GGATC	3 cut(s)	11, 86, 250
AcuI	CTGAAG	2 cut(s)	302, 327
AfiI	CCNNNNNNNGG	3 cut(s)	152, 199, 559
AgsI	TTSAA	6 cut(s)	28, 37, 332, 360, 479, 522
AjnI	CCWGG	2 cut(s)	151, 546
AluBI	AGCT	2 cut(s)	115, 437
AluI	AGCT	2 cut(s)	115, 437
Alw26I	GTCTC	2 cut(s)	329, 357
AlwI	GGATC	3 cut(s)	11, 86, 250
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	3 cut(s)	155, 190, 561
ApaI	GGGCCC	1 cut(s)	565
ApeKI	GCWGC	2 cut(s)	173, 514
AspLEI	GCGC	2 cut(s)	58, 514
AspS9I	GGNCC	5 cut(s)	155, 544, 550, 561, 562
AsuC2I	CCSGG	4 cut(s)	6, 81, 559, 560
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	2 cut(s)	544, 550
BaeGI	GKGCMC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	160, 501
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	153, 548
BcnI	CCSGG	4 cut(s)	6, 81, 559, 560
BcoDI	GTCTC	2 cut(s)	329, 357
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	2 cut(s)	59, 515
BisI	GCNGC	2 cut(s)	174, 515
BlsI	GCNGC	2 cut(s)	175, 516
Bme1390I	CCNGG	6 cut(s)	6, 81, 153, 548, 559, 560
Bme18I	GGWCC	2 cut(s)	544, 550
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	5 cut(s)	155, 544, 550, 561, 562
BmiI	GGNNCC	3 cut(s)	418, 552, 563
BmrFI	CCNGG	6 cut(s)	6, 81, 153, 548, 559, 560
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	4 cut(s)	18, 58, 66, 93
BmuI	ACTGGG	1 cut(s)	501
BpuMI	CCSGG	4 cut(s)	6, 81, 559, 560
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	4 cut(s)	152, 198, 420, 558
BsaWI	WCCGGW	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 199, 559
Bse1I	ACTGG	1 cut(s)	496
BseBI	CCWGG	2 cut(s)	153, 548
BseDI	CCNNGG	4 cut(s)	152, 198, 420, 558
BseGI	GGATG	5 cut(s)	81, 130, 132, 208, 415
BseLI	CCNNNNNNNGG	3 cut(s)	152, 199, 559
BseNI	ACTGG	1 cut(s)	496
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	160, 501
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	3 cut(s)	157, 192, 563
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	4 cut(s)	5, 80, 487, 559
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	3 cut(s)	152, 199, 559
BsmAI	GTCTC	2 cut(s)	329, 357
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	157, 192, 563
Bso31I	GGTCTC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	558
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	4 cut(s)	16, 91, 242, 503
Bsp19I	CCATGG	1 cut(s)	420
Bsp68I	TCGCGA	1 cut(s)	502
BspACI	CCGC	3 cut(s)	31, 162, 555
BspANI	GGCC	3 cut(s)	157, 192, 563
BspFNI	CGCG	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	418, 552, 563
BspPI	GGATC	3 cut(s)	11, 86, 250
BspTNI	GGTCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	4 cut(s)	152, 198, 420, 558
BssMI	GATC	4 cut(s)	16, 91, 242, 503
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	153, 548
Bst4CI	ACNGT	3 cut(s)	265, 388, 597
Bst6I	CTCTTC	3 cut(s)	244, 327, 441
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	2 cut(s)	198, 420
BstF5I	GGATG	5 cut(s)	81, 130, 132, 208, 415
BstFNI	CGCG	1 cut(s)	502
BstH2I	RGCGCY	2 cut(s)	59, 515
BstHHI	GCGC	2 cut(s)	58, 514
BstKTI	GATC	4 cut(s)	19, 94, 245, 506
BstMAI	GTCTC	2 cut(s)	329, 357
BstMBI	GATC	4 cut(s)	16, 91, 242, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 182
BstNI	CCWGG	2 cut(s)	153, 548
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	6 cut(s)	4, 79, 151, 546, 557, 558
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	160, 501
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	157, 192, 563
BtgI	CCRYGG	2 cut(s)	198, 420
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	5 cut(s)	81, 130, 132, 208, 415
BtsIMutI	CAGTG	2 cut(s)	19, 94
BtuMI	TCGCGA	1 cut(s)	502
CfoI	GCGC	2 cut(s)	58, 514
Cfr13I	GGNCC	5 cut(s)	155, 544, 550, 561, 562
Cfr9I	CCCGGG	1 cut(s)	558
CviAII	CATG	4 cut(s)	236, 403, 421, 527
CviJI	RGCY	8 cut(s)	115, 157, 173, 192, 419, 437, 496, 563
CviKI_1	RGCY	8 cut(s)	115, 157, 173, 192, 419, 437, 496, 563
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	4 cut(s)	18, 93, 244, 505
DpnII	GATC	4 cut(s)	16, 91, 242, 503
DrdI	GACNNNNNNGTC	2 cut(s)	470, 496
DseDI	GACNNNNNNGTC	2 cut(s)	470, 496
Eam1104I	CTCTTC	3 cut(s)	244, 327, 441
EarI	CTCTTC	3 cut(s)	244, 327, 441
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	544, 550
Eco57I	CTGAAG	2 cut(s)	302, 327
Eco88I	CYCGRG	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	151, 546
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	4 cut(s)	239, 406, 424, 530
FaiI	YATR	9 cut(s)	62, 149, 237, 300, 383, 404, 422, 441, 528
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	4 cut(s)	235, 402, 420, 526
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	174, 515
FokI	GGATG	5 cut(s)	88, 119, 137, 215, 422
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	174, 515
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	2 cut(s)	57, 513
GluI	GCNGC	2 cut(s)	174, 515
GsaI	CCCAGC	1 cut(s)	75
HaeII	RGCGCY	2 cut(s)	59, 515
HaeIII	GGCC	3 cut(s)	157, 192, 563
HapII	CCGG	4 cut(s)	5, 80, 487, 559
HhaI	GCGC	2 cut(s)	58, 514
Hin1II	CATG	4 cut(s)	239, 406, 424, 530
Hin6I	GCGC	2 cut(s)	56, 512
HinP1I	GCGC	2 cut(s)	56, 512
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HpaII	CCGG	4 cut(s)	5, 80, 487, 559
Hpy166II	GTNNAC	3 cut(s)	198, 210, 261
Hpy188III	TCNNGA	4 cut(s)	246, 329, 360, 501
Hpy8I	GTNNAC	3 cut(s)	198, 210, 261
HpyAV	CCTTC	4 cut(s)	31, 35, 370, 400
HpyCH4III	ACNGT	3 cut(s)	265, 388, 597
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 182
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	239, 406, 424, 530
HspAI	GCGC	2 cut(s)	56, 512
Kzo9I	GATC	4 cut(s)	16, 91, 242, 503
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	2 cut(s)	160, 501
LweI	GCATC	4 cut(s)	18, 58, 66, 93
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	212
MalI	GATC	4 cut(s)	18, 93, 244, 505
MboI	GATC	4 cut(s)	16, 91, 242, 503
MboII	GAAGA	4 cut(s)	261, 333, 344, 458
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	3 cut(s)	48, 104, 390
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	8 cut(s)	196, 249, 271, 315, 377, 442, 448, 593
MspI	CCGG	4 cut(s)	5, 80, 487, 559
MspR9I	CCNGG	6 cut(s)	6, 81, 153, 548, 559, 560
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	153, 548
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	170, 182
NciI	CCSGG	4 cut(s)	6, 81, 559, 560
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	4 cut(s)	16, 91, 242, 503
NlaIII	CATG	4 cut(s)	239, 406, 424, 530
NlaIV	GGNNCC	3 cut(s)	418, 552, 563
NruI	TCGCGA	1 cut(s)	502
NspI	RCATGY	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	2 cut(s)	175, 516
Psp6I	CCWGG	2 cut(s)	151, 546
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	151, 546
PspN4I	GGNNCC	3 cut(s)	418, 552, 563
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	5 cut(s)	155, 544, 550, 561, 562
PsuI	RGATCY	1 cut(s)	242
RruI	TCGCGA	1 cut(s)	502
SatI	GCNGC	2 cut(s)	174, 515
Sau3AI	GATC	4 cut(s)	16, 91, 242, 503
Sau96I	GGNCC	5 cut(s)	155, 544, 550, 561, 562
ScrFI	CCNGG	6 cut(s)	6, 81, 153, 548, 559, 560
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	7 cut(s)	117, 154, 215, 260, 369, 439, 453
SfaNI	GCATC	4 cut(s)	18, 58, 66, 93
SinI	GGWCC	2 cut(s)	544, 550
SmaI	CCCGGG	1 cut(s)	560
SrfI	GCCCGGGC	1 cut(s)	560
Sse9I	AATT	3 cut(s)	48, 104, 390
SsiI	CCGC	3 cut(s)	31, 162, 555
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	6 cut(s)	4, 79, 151, 546, 557, 558
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	3 cut(s)	265, 388, 597
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	585
TasI	AATT	3 cut(s)	48, 104, 390
TscAI	CASTG	2 cut(s)	19, 94
TseI	GCWGC	2 cut(s)	173, 514
TspDTI	ATGAA	2 cut(s)	141, 419
TspGWI	ACGGA	2 cut(s)	116, 215
TspMI	CCCGGG	1 cut(s)	558
TspRI	CASTG	2 cut(s)	19, 94
VpaK11BI	GGWCC	2 cut(s)	544, 550
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	1 cut(s)	239
XmaI	CCCGGG	1 cut(s)	558
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.