pycom08g02010

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
1466673 .. 1467878
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGCTGCCTCTTCCAACAGATTATATTTTAGGAACAGGGGTTGTTATACTGGACGATTGTAATTTCCACGAATCTGTACATCTTGATAGTTTCAATGTTGACAGAACACTTACATTGGTACCAACAGATGGTGAATTTCCTGTCATGAATTACCGCATCACTCATTCAAACTTGGGACAGCTTTTAGAAAATTTGGATGAACTTTTACTCAGCGATAAATCTTTAGGGTTAGTTTTGAGTTGGAACCTGGAGTGGTTGGAAACACAACTGATGGGTTTGCTTCAGTGTTCGAAATTAGTAACAGGTGCCTTACATTGTGTATTGTTGGTTTACAGGCAAAGCTGA

Protein Analysis

115

Amino Acids

12.83

Weight (kDa)

4.49

Isoelectric Point (pI)

19.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 15 - 57 4.1e-13 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 2 cut(s) 118, 305
AccB7I CCANNNNNTGG 1 cut(s) 128
AciI CCGC 1 cut(s) 154
AcsI RAATTY 2 cut(s) 134, 190
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 2 cut(s) 78, 120
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 2 cut(s) 94, 168
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 2 cut(s) 181, 342
AluI AGCT 2 cut(s) 181, 342
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 134, 190
Asp718I GGTACC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 290
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BanI GGYRCC 2 cut(s) 118, 305
BccI CCATC 2 cut(s) 122, 265
BciT130I CCWGG 1 cut(s) 248
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 120, 245, 307
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 54
BshNI GGYRCC 2 cut(s) 118, 305
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 76
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 120, 245, 307
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 118, 305
BsrGI TGTACA 1 cut(s) 76
BsrI ACTGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 202
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 290
CciI TCATGA 1 cut(s) 144
Csp6I GTAC 2 cut(s) 77, 119
CviAII CATG 1 cut(s) 145
CviJI RGCY 2 cut(s) 181, 342
CviKI_1 RGCY 2 cut(s) 181, 342
CviQI GTAC 2 cut(s) 77, 119
DdeI CTNAG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 148
FaiI YATR 3 cut(s) 24, 47, 146
FaqI GGGAC 1 cut(s) 189
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 269
Hin1II CATG 1 cut(s) 148
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 71
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 100, 331
Hpy188III TCNNGA 2 cut(s) 83, 145
Hpy8I GTNNAC 2 cut(s) 100, 331
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 1 cut(s) 148
KpnI GGTACC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 21, 35, 153, 233, 260, 288, 319
LweI GCATC 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 298
MluCI AATT 5 cut(s) 61, 134, 148, 190, 293
MmeI TCCRAC 3 cut(s) 38, 221, 237
MnlI CCTC 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 3 cut(s) 120, 245, 307
NspV TTCGAA 1 cut(s) 290
PagI TCATGA 1 cut(s) 144
PfeI GAWTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 120, 245, 307
RsaI GTAC 2 cut(s) 78, 120
RsaNI GTAC 2 cut(s) 77, 119
SatI GCNGC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 248
SetI ASST 4 cut(s) 183, 249, 307, 344
SfaNI GCATC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 290
Sse9I AATT 5 cut(s) 61, 134, 148, 190, 293
SsiI CCGC 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 246
TaqI TCGA 1 cut(s) 290
TasI AATT 5 cut(s) 61, 134, 148, 190, 293
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 290
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 161, 213
TspRI CASTG 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 128
XapI RAATTY 2 cut(s) 134, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.