Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1946446 .. 1947904

Gene Structure 1459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGATTGAACATAATCTTCTGAGTGCCAGCAAACTTTACACCAATATAAGTTTTGAAGAATTGGGCACTTTGCTGGGAATTGAGCCTCATAAGGCTGAGAAGATTGCATCAAAAATGATATATGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAGGCTGTCATACATTTTGAGGATGACTCTGAAGAGCTGCAGCAATGGGATCGAGCAGCCCCTGTGGGAGGGGAGTGTCACATTTTTCTGTTGGCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

86

Amino Acids

9.63

Weight (kDa)

4.67

Isoelectric Point (pI)

65.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	1 - 60	4.4e-17	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	148, 213
AcuI	CTGAAG	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	8, 56
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AlwI	GGATC	2 cut(s)	148, 213
AlwNI	CAGNNNCTG	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	193, 196, 212
BaeGI	GKGCMC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	180, 208, 224
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BclI	TGATCA	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	194
BisI	GCNGC	3 cut(s)	194, 197, 213
BlsI	GCNGC	3 cut(s)	195, 198, 214
BmsI	GCATC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	11, 87
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	180, 208, 224
BseYI	CCCAGC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	140, 148, 205
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	12, 88
BspMAI	CTGCAG	1 cut(s)	198
BspPI	GGATC	2 cut(s)	148, 213
BspQI	GCTCTTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	206
BssMI	GATC	3 cut(s)	140, 148, 205
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	20, 96
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	3 cut(s)	143, 151, 208
BstMBI	GATC	3 cut(s)	140, 148, 205
BstSFI	CTRYAG	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	3 cut(s)	180, 208, 224
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	218
CviJI	RGCY	5 cut(s)	85, 95, 161, 193, 215
CviKI_1	RGCY	5 cut(s)	85, 95, 161, 193, 215
DdeI	CTNAG	2 cut(s)	20, 96
DpnI	GATC	3 cut(s)	142, 150, 207
DpnII	GATC	3 cut(s)	140, 148, 205
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	222
FaiI	YATR	6 cut(s)	12, 47, 90, 121, 123, 167
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	194, 197, 213
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	194, 197, 213
GluI	GCNGC	3 cut(s)	194, 197, 213
GsaI	CCCAGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	21, 187
HpyCH4V	TGCA	2 cut(s)	107, 196
HpyF3I	CTNAG	2 cut(s)	20, 96
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	140, 148, 205
LguI	GCTCTTC	1 cut(s)	183
LpnPI	CCDG	4 cut(s)	40, 59, 137, 231
Lsp1109I	GCAGC	3 cut(s)	180, 208, 224
LweI	GCATC	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	3 cut(s)	142, 150, 207
MboI	GATC	3 cut(s)	140, 148, 205
MboII	GAAGA	4 cut(s)	8, 68, 112, 200
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	59, 78
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	6 cut(s)	96, 118, 129, 151, 169, 218
NdeII	GATC	3 cut(s)	140, 148, 205
NmuCI	GTSAC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	195, 198, 214
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	183
SatI	GCNGC	3 cut(s)	194, 197, 213
Sau3AI	GATC	3 cut(s)	140, 148, 205
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	2 cut(s)	156, 195
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	194
SgeI	CNNG	5 cut(s)	39, 86, 164, 221, 230
Sse9I	AATT	2 cut(s)	59, 78
SsiI	CCGC	1 cut(s)	251
TaqI	TCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	59, 78
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	193, 196, 212
Tsp45I	GTSAC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.